I. Summary

SecReT6 ID	533
Strain	Pseudovibrio sp. FO-BEG1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016642
Location	1955327..1973032
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	1	0	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PSE_1849	1951029..1951295 [+], 267	374330197	hypothetical protein
2	PSE_1850	1951410..1951913 [-], 504	374330198	hypothetical protein
3	PSE_1851	1952398..1952826 [-], 429	374330199	transcriptional regulator, AsnC family
4	PSE_1852	1952973..1954115 [+], 1143	374330200	amidohydrolase family protein
5	PSE_1853 (ygeX)	1954129..1955298 [+], 1170	374330201	Diaminopropionate ammonia-lyase
6	PSE_1854 (impA)	1955327..1956751 [-], 1425	374330202	ImpA domain-containing protein	TssA
7	PSE_1855 (icmF)	1956757..1960158 [-], 3402	374330203	Type VI secretion protein IcmF	TssM
8	PSE_1856	1960615..1961124 [+], 510	374330204	hypothetical protein	TssB
9	PSE_1857 (evpB)	1961221..1962714 [+], 1494	374330205	type VI secretion protein EvpB	TssC
10	PSE_1858	1962784..1963182 [+], 399	374330206	Type VI secretion system, lysozyme-related protein	TssE
11	PSE_1859	1963201..1964988 [+], 1788	374330207	Type VI secretion system	TssF
12	PSE_1860	1964997..1965986 [+], 990	374330208	hypothetical protein	TssG
13	PSE_1861 (fha)	1965995..1967494 [+], 1500	374330209	FHA domain-containing protein	Fha
14	PSE_1862	1967560..1968120 [+], 561	374330210	hypothetical protein	TssJ
15	PSE_1863	1968228..1969499 [+], 1272	374330211	hypothetical protein	TssK
16	PSE_1864 (dotU)	1969496..1970317 [+], 822	374330212	Type IV / VI secretion system DotU	TssL
17	PSE_1865 (clpV1)	1970333..1973032 [+], 2700	374330213	ATPase, type VI secretion system ClpV1	TssH
18	PSE_1866	1973073..1974608 [+], 1536	374330214	Nif-specific regulatory protein
19	PSE_1867	1974674..1975468 [+], 795	374330215	hypothetical protein
20	PSE_1868	1975498..1976397 [+], 900	374330216	pentapeptide repeat-containing protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

N/A

N/A

(1) Bondarev V et al. (2013). The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. Environ Microbiol. 15(7):2095-113. [PudMed:23601235]

This literature contains bioinformatics investigation