I. Summary
SecReT6 ID534 insolico
StrainPseudovibrio sp. FO-BEG1
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1PSE_28433032440..3035139 [-], 2700374331189hypothetical protein 
2PSE_2844 (icmF)3035230..3038859 [-], 3630374331190Type VI secretion protein IcmF  TssM
3PSE_2845 (dotU)3038856..3040196 [-], 1341374331191Type IV / VI secretion system, DotU/OmpA/MotB  TssL
4PSE_28463040306..3041643 [-], 1338374331192hypothetical protein  TssK
5PSE_28473041643..3042056 [-], 414374331193hypothetical protein  TssJ
6PSE_2848 (fha)3042127..3042786 [-], 660374331194FHA domain-containing protein  Fha
7PSE_28493042947..3043063 [-], 117374331195hypothetical protein  PAAR
8PSE_28503043234..3043800 [-], 567374331196hypothetical protein 
9PSE_28513043836..3045944 [-], 2109374331197Rhs element Vgr protein  TssI
10PSE_28523045986..3046279 [-], 294374331198hypothetical protein 
11PSE_28533046289..3048286 [-], 1998374331199hypothetical protein  TssC
12PSE_28543048279..3049007 [-], 729374331200voltage-gated sodium channel 
13PSE_2855 (clpV)3049297..3051891 [-], 2595374331201type VI secretion ATPase, ClpV1 family  TssH
14PSE_28563051987..3053153 [-], 1167374331202hypothetical protein  TssG
15PSE_28573053150..3055027 [-], 1878374331203Type VI secretion system  TssF
16PSE_28583055029..3055535 [-], 507374331204Type VI secretion system, lysozyme-related protein  TssE
17PSE_2859 (sciE)3055528..3056379 [-], 852374331205virulence protein, SciE type  TagJ
18PSE_2860 (sciM)3056463..3056993 [-], 531374331206SciM protein  TssD
19PSE_2861 (sciI)3057127..3058632 [-], 1506374331207Cytoplasmic protein SciI  TssC
20PSE_2862 (sciH)3058625..3059047 [-], 423374331208Cytoplasmic protein SciH  TssB
21PSE_2863 (impA)3059201..3060247 [-], 1047374331209ImpA domain-containing protein  TssA
22PSE_28643061211..3062080 [-], 870374331210hypothetical protein 
23PSE_28653062300..3063475 [-], 1176374331211hypothetical protein 
24PSE_28663063505..3064890 [-], 1386374331212cytochrome P450 family protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1PSE_p0124(hcp1)137273..137848 [-], 576374333545Type VI secretion system effector, Hcp1 idrA

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Proteins        Genes
(1) Bondarev V et al. (2013). The genus Pseudovibrio contains metabolically versatile bacteria adapted for symbiosis. Environ Microbiol. 15(7):2095-113. [PudMed:23601235] in_silico
in_silico This literature contains bioinformatics investigation