SecReT6
I. Summary
SecReT6 ID538 insolico
StrainShigella sonnei 53G
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_016822
Location252419..275358
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number121121311
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SSON53_01170247504..248226 [+], 723383176816hypothetical protein 
2SSON53_01175 (rnhA)248223..248690 [-], 468383176817ribonuclease H 
3SSON53_01180248755..249486 [+], 732383176818DNA polymerase III subunit epsilon 
4SSON53_01185250025..250810 [+], 786383176819aminopeptidase 
5SSON53_01190250947..251426 [-], 480383176820hypothetical protein 
6SSON53_01205252419..252901 [-], 483383176821type VI secretion system effector  TssD
7SSON53_01210252925..254277 [-], 1353383176822hypothetical protein  TssA
8SSON53_01225257831..259243 [-], 1413383176823hypothetical protein  TssA
9SSON53_01230259248..259991 [-], 744383176824type VI secretion-associated protein 
10SSON53_01235259988..262777 [-], 2790383176825ATP-dependent Clp proteinase ATP-binding chain  TssH
11SSON53_01240262786..263547 [-], 762383176826putative membrane protein Aec26  TssL
12SSON53_01245263552..264883 [-], 1332383176827hypothetical protein  TssK
13SSON53_01250264886..265410 [-], 525383176828lipoprotein  TssJ
14SSON53_01255265407..266687 [-], 1281383176829type VI secretion system protein ImpI  Fha
15SSON53_01260266712..267794 [-], 1083383176830hypothetical protein  TssG
16SSON53_01265267758..269608 [-], 1851383176831type VI secretion system protein ImpG  TssF
17SSON53_01270269612..270025 [-], 414383176832type VI secretion system lysozyme-like protein  TssE
18SSON53_01275270032..270580 [-], 549383176833type VI secretion protein EvpB  TssC
19SSON53_01280270617..271507 [-], 891383176834hypothetical protein  TssC
20SSON53_01285271558..271782 [-], 225383176835hypothetical protein  TssC
21SSON53_01290271817..272317 [-], 501383176836hypothetical protein  TssB
22SSON53_01295272744..272887 [+], 144383176837hypothetical protein 
23SSON53_01300273014..273532 [+], 519383176838hemolysin co-regulated protein  TssD
24SSON53_01305273742..275358 [+], 1617383176839Rhs element protein  TssI
25SSON53_01310275573..277108 [+], 1536383176840transposase 
26SSON53_01315277125..277880 [+], 756383176841transposase subunit 
27SSON53_01320278042..278527 [+], 486383176842hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SSON53_01300273014..273532 [+], 519383176838hemolysin co-regulated protein ABG57132

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Proteins        Genes
N/A
N/A