I. Summary

SecReT6 ID	54
Strain	Vibrio vulnificus YJ016
Replicon	chromosome II [Browse all T6SS(s) in this replicon]
Accession	NC_005140
Location	1081034..1115237
Comment
Function	N/A
T6SS Type	Type i; subtype i5
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	2	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	VVA0972	1076153..1076743 [+], 591	37676632	hypothetical protein
2	VVA0973	1076743..1078596 [+], 1854	37676633	Zn-dependent protease with chaperone function
3	VVA0974	1078696..1078821 [-], 126	37676634	hypothetical protein
4	VVA0975	1078940..1080304 [+], 1365	37676635	hypothetical protein
5	VVA0976	1081034..1085530 [-], 4497	37676636	Rhs family protein
6	VVA0977	1085531..1086439 [-], 909	37676637	hypothetical protein
7	VVA0978	1086740..1088575 [-], 1836	37676638	hypothetical protein	TssI
8	VVA0979	1088630..1089109 [-], 480	37676639	hemolysin-coregulated protein	TssD
9	VVA0980	1089325..1091889 [-], 2565	37676640	chaperone ATPase	TssH
10	VVA0981	1091903..1092904 [-], 1002	37676641	hypothetical protein	TssG
11	VVA0982	1092868..1094694 [-], 1827	37676642	hypothetical protein	TssF
12	VVA0983	1094691..1095164 [-], 474	37676643	hypothetical protein	TssE
13	VVA0984	1095161..1095964 [-], 804	37676644	hypothetical protein	TagJ
14	VVA0985	1095975..1097582 [-], 1608	37676645	hypothetical protein	TssC
15	VVA0986	1097513..1099006 [-], 1494	37676646	hypothetical protein	TssC
16	VVA0987	1099018..1099530 [-], 513	37676647	hypothetical protein	TssB
17	VVA0988	1099547..1100680 [-], 1134	37676648	hypothetical protein	TssA
18	VVA0989	1100680..1101552 [-], 873	37676649	phosphoprotein phosphatase
19	VVA0990	1101485..1102180 [-], 696	37676650	hypothetical protein
20	VVA0991	1102162..1105686 [-], 3525	37676651	hypothetical protein	TssM
21	VVA0992	1105664..1106992 [-], 1329	37676652	hypothetical protein	TssL
22	VVA0993	1107001..1108323 [-], 1323	37676653	hypothetical protein	TssK
23	VVA0994	1108347..1108802 [-], 456	37676654	hypothetical protein	TssJ
24	VVA0995	1108803..1110107 [-], 1305	37676655	hypothetical protein	Fha
25	VVA0996	1110336..1112504 [+], 2169	37676656	hypothetical protein
26	VVA0997	1112568..1113185 [-], 618	37676657	glutathione S-transferase
27	VVA0998	1113286..1113873 [+], 588	37676658	transcriptional regulator
28	VVA0999	1113870..1114265 [+], 396	37676659	DNA-binding protein
29	VVA1000	1114272..1114535 [-], 264	37676660	hypothetical protein
30	VVA1001	1114568..1114873 [+], 306	37676661	hypothetical protein
31	VVA1002	1114893..1115237 [-], 345	37676662	hypothetical protein
32	VVA1003	1115499..1117097 [+], 1599	37676663	signal transduction protein
33	VVA1004 (phhB)	1117197..1117529 [-], 333	37676664	pterin-4-alpha-carbinolamine dehydratase
34	VVA1005 (phhA)	1117522..1118316 [-], 795	37676665	phenylalanine 4-monooxygenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

VPA1027

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	VVA0979	1088630..1089109 [-], 480	37676639	hemolysin-coregulated protein	VPA1027

Download FASTA format files

Proteins        Genes

N/A

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603]

This literature contains bioinformatics investigation