I. Summary
SecReT6 ID54 insolico
StrainVibrio vulnificus YJ016
Repliconchromosome II [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i5
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1VVA09721076153..1076743 [+], 59137676632hypothetical protein 
2VVA09731076743..1078596 [+], 185437676633Zn-dependent protease with chaperone function 
3VVA09741078696..1078821 [-], 12637676634hypothetical protein 
4VVA09751078940..1080304 [+], 136537676635hypothetical protein 
5VVA09761081034..1085530 [-], 449737676636Rhs family protein 
6VVA09771085531..1086439 [-], 90937676637hypothetical protein 
7VVA09781086740..1088575 [-], 183637676638hypothetical protein  TssI
8VVA09791088630..1089109 [-], 48037676639hemolysin-coregulated protein  TssD
9VVA09801089325..1091889 [-], 256537676640chaperone ATPase  TssH
10VVA09811091903..1092904 [-], 100237676641hypothetical protein  TssG
11VVA09821092868..1094694 [-], 182737676642hypothetical protein  TssF
12VVA09831094691..1095164 [-], 47437676643hypothetical protein  TssE
13VVA09841095161..1095964 [-], 80437676644hypothetical protein  TagJ
14VVA09851095975..1097582 [-], 160837676645hypothetical protein  TssC
15VVA09861097513..1099006 [-], 149437676646hypothetical protein  TssC
16VVA09871099018..1099530 [-], 51337676647hypothetical protein  TssB
17VVA09881099547..1100680 [-], 113437676648hypothetical protein  TssA
18VVA09891100680..1101552 [-], 87337676649phosphoprotein phosphatase 
19VVA09901101485..1102180 [-], 69637676650hypothetical protein 
20VVA09911102162..1105686 [-], 352537676651hypothetical protein  TssM
21VVA09921105664..1106992 [-], 132937676652hypothetical protein  TssL
22VVA09931107001..1108323 [-], 132337676653hypothetical protein  TssK
23VVA09941108347..1108802 [-], 45637676654hypothetical protein  TssJ
24VVA09951108803..1110107 [-], 130537676655hypothetical protein  Fha
25VVA09961110336..1112504 [+], 216937676656hypothetical protein 
26VVA09971112568..1113185 [-], 61837676657glutathione S-transferase 
27VVA09981113286..1113873 [+], 58837676658transcriptional regulator 
28VVA09991113870..1114265 [+], 39637676659DNA-binding protein 
29VVA10001114272..1114535 [-], 26437676660hypothetical protein 
30VVA10011114568..1114873 [+], 30637676661hypothetical protein 
31VVA10021114893..1115237 [-], 34537676662hypothetical protein 
32VVA10031115499..1117097 [+], 159937676663signal transduction protein 
33VVA1004 (phhB)1117197..1117529 [-], 33337676664pterin-4-alpha-carbinolamine dehydratase 
34VVA1005 (phhA)1117522..1118316 [-], 79537676665phenylalanine 4-monooxygenase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1VVA09791088630..1089109 [-], 48037676639hemolysin-coregulated protein VPA1027

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Proteins        Genes
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation