I. Summary
SecReT6 ID542 insolico
StrainSalmonella enterica subsp. enterica serovar Gallinarum/pullorum str. RKS5078
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SPUL_18971882563..1882760 [-], 198378955570hypothetical protein 
2SPUL_18981883558..1884022 [-], 465378955571hypothetical protein 
3SPUL_19001887460..1889571 [-], 2112378955572RHS-family protein  TssI
4SPUL_19011889793..1890197 [-], 405378955573hypothetical protein  TssD
5SPUL_19021890709..1890915 [-], 207378955574hypothetical protein 
6SPUL_19031890940..1891443 [+], 504378955575hypothetical protein  TssB
7SPUL_19041891473..1891685 [+], 213378955576hypothetical protein  TssC
8SPUL_19051891734..1893206 [+], 1473378955577hypothetical protein  TssC
9SPUL_19061893203..1893619 [+], 417378955578hypothetical protein  TssE
10SPUL_19071893624..1895477 [+], 1854378955579hypothetical protein  TssF
11SPUL_19081895441..1896529 [+], 1089378955580hypothetical protein  TssG
12SPUL_19091896554..1897840 [+], 1287378955581hypothetical protein  Fha
13SPUL_19101897837..1898370 [+], 534378955582putative lipoprotein  TssJ
14SPUL_19111898373..1899704 [+], 1332378955583hypothetical protein  TssK
15SPUL_19121899709..1900458 [+], 750378955584hypothetical protein  TssL
16SPUL_19131900471..1903062 [+], 2592378955585putative clpB-protease  TssH
17SPUL_19141903059..1903796 [+], 738378955586hypothetical protein 
18SPUL_19151903915..1905210 [+], 1296378955587hypothetical protein  TssA
19SPUL_19161905289..1908750 [+], 3462378955588hypothetical protein  TssM
20SPUL_19171908761..1910155 [+], 1395378955589hypothetical protein  TssA
21SPUL_19181910143..1910622 [+], 480378955590hypothetical protein  TssD
22SPUL_19191910655..1911527 [+], 873378955591putative DNA-binding protein 
23SPUL_19201911995..1912366 [+], 372378955592hypothetical protein 
24SPUL_19211913385..1913510 [-], 126378955593hypothetical protein 
25SPUL_19221913549..1913719 [-], 171378955594hypothetical protein 
26SPUL_19231913813..1914091 [+], 279378955595hypothetical protein 
27SPUL_19241914258..1915361 [-], 1104378955596putative oxidoreductase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list
STY2606 , ABG57132, Hcp

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SPUL_0509562660..563028 [-], 369378954280hypothetical protein STY2606
2SPUL_19011889793..1890197 [-], 405378955573hypothetical protein ABG57132
3SPUL_31363142440..3142925 [-], 486378956749hypothetical protein Hcp

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Proteins        Genes

Homology Immunity protein list

Immunity protein identified
#Locus tag(Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1SPUL_0508562142..562660 [-], 519378954279putative lipoprotein STY2607

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Proteins        Genes