 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | STBHUCCB_27220 | 2642635..2646699 [-], 4065 | 378960750 | Rhs-family protein | PAAR |
2 | STBHUCCB_27230 | 2646718..2647164 [-], 447 | 378960751 | hypothetical protein | |
3 | STBHUCCB_27240 | 2647188..2649377 [-], 2190 | 378960752 | Rhs-family protein | TssI |
4 | STBHUCCB_27250 | 2649855..2650292 [-], 438 | 378960753 | pathogenicity island protein | |
5 | STBHUCCB_27260 | 2650319..2650705 [-], 387 | 378960754 | hypothetical protein | |
6 | STBHUCCB_27270 | 2650732..2650854 [-], 123 | 378960755 | hypothetical protein | |
7 | STBHUCCB_27280 | 2650863..2651324 [-], 462 | 378960756 | hypothetical protein | |
8 | STBHUCCB_27290 | 2651883..2652356 [-], 474 | 378960757 | hypothetical protein | |
9 | STBHUCCB_27300 | 2652341..2652811 [-], 471 | 378960758 | hypothetical protein | |
10 | STBHUCCB_27310 | 2652854..2653621 [-], 768 | 378960759 | hypothetical protein | |
11 | STBHUCCB_27340 | 2657719..2658213 [-], 495 | 378960760 | hypothetical protein | |
12 | STBHUCCB_27350 | 2658245..2658994 [-], 750 | 378960761 | hypothetical protein | |
13 | STBHUCCB_27360 | 2658999..2660300 [-], 1302 | 378960762 | hypothetical protein | TssL |
14 | STBHUCCB_27370 | 2660297..2661640 [-], 1344 | 378960763 | Type VI secretion protein | TssK |
15 | STBHUCCB_27380 | 2661644..2662135 [-], 492 | 378960764 | Type VI secretion lipoprotein | TssJ |
16 | STBHUCCB_27390 | 2662247..2662732 [-], 486 | 378960765 | hypothetical protein | TssD |
17 | STBHUCCB_27400 | 2662969..2663394 [-], 426 | 378960766 | hypothetical protein | STY0301 (i) |
18 | STBHUCCB_27430 | 2665352..2665894 [-], 543 | 378960767 | Type VI secretion protein | TssB |
19 | STBHUCCB_27440 | 2665958..2666248 [-], 291 | 378960768 | hypothetical protein | |
20 | STBHUCCB_27450 | 2666334..2668997 [-], 2664 | 378960769 | hypothetical protein | TssH |
21 | STBHUCCB_27460 | 2669377..2670267 [+], 891 | 378960770 | hypothetical protein | |
22 | STBHUCCB_27470 | 2670254..2671078 [+], 825 | 378960771 | hypothetical protein | TagJ |
23 | STBHUCCB_27480 | 2671075..2671569 [+], 495 | 378960772 | Type VI secretion system lysozyme-related protein | TssE |
24 | STBHUCCB_27490 | 2671585..2673468 [+], 1884 | 378960773 | Type VI secretion protein | TssF |
25 | STBHUCCB_27500 | 2673465..2674460 [+], 996 | 378960774 | hypothetical protein | TssG |
26 | STBHUCCB_27510 | 2674477..2674893 [+], 417 | 378960775 | ImpA-related N-family protein | TssA |
27 | STBHUCCB_27520 | 2674893..2675525 [+], 633 | 378960776 | ImpA-related N-family protein | TssA |
28 | STBHUCCB_27530 | 2676055..2676795 [-], 741 | 378960777 | DNA polymerase III subunit epsilon | |
29 | STBHUCCB_27540 | 2676850..2677317 [+], 468 | 378960778 | ribonuclease H | |
30 | STBHUCCB_27550 | 2677314..2678036 [-], 723 | 378960779 | hypothetical protein | |
31 | STBHUCCB_27560 | 2678071..2678826 [+], 756 | 378960780 | hydroxyacylglutathione hydrolase | |
32 | STBHUCCB_27570 | 2679045..2680265 [+], 1221 | 378960781 | membrane-bound lytic murein transglycosylase D | |
33 | STBHUCCB_27580 | 2680321..2681091 [-], 771 | 378960782 | S-adenosyl-L-methionine-dependent methyltransferase | |
34 | STBHUCCB_27590 | 2681169..2681969 [-], 801 | 378960783 | hypothetical protein | |
35 | STBHUCCB_27600 | 2682101..2683276 [-], 1176 | 378960784 | major facilitator family transporter | |
36 | STBHUCCB_27610 | 2683381..2684295 [+], 915 | 378960785 | LysR family transcriptional regulator | |
37 | STBHUCCB_27620 | 2684316..2685119 [-], 804 | 378960786 | 2,5-diketo-D-gluconic acid reductase B | |
38 | STBHUCCB_27630 | 2691151..2693724 [-], 2574 | 378960787 | hypothetical protein | TssH |
39 | STBHUCCB_27640 | 2693854..2694585 [-], 732 | 378960788 | hypothetical protein | |
40 | STBHUCCB_27650 | 2694582..2695562 [-], 981 | 378960789 | ribosomal large subunit pseudouridine synthase D | |
41 | STBHUCCB_27660 | 2695694..2696431 [+], 738 | 378960790 | hypothetical protein | |
42 | STBHUCCB_27670 | 2696703..2697041 [+], 339 | 378960791 | ribosome-associated inhibitor A | |
43 | STBHUCCB_27680 | 2697292..2698452 [+], 1161 | 378960792 | prephenate dehydratase | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein