I. Summary
SecReT6 ID544 insolico
StrainRahnella aquatilis CIP 78.65 = ATCC 33071
Repliconplasmid pRahaq201 [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq2_456722..2739 [+], 2718379703933type VI secretion ATPase, ClpV1 family  TssH
2Rahaq2_45682739..5126 [+], 2388379703934Rhs element Vgr protein  TssI
3Rahaq2_45695143..7794 [+], 2652379703935putative chitinase 
4Rahaq2_45707796..8731 [+], 936379703936hypothetical protein 
5Rahaq2_45729315..9830 [+], 516379703937hypothetical protein 
6Rahaq2_45739847..11844 [+], 1998379703938hypothetical protein 
7Rahaq2_457412145..12621 [+], 477379703939hypothetical protein 
8Rahaq2_457512812..13252 [+], 441379703940hypothetical protein 
9Rahaq2_457613273..15705 [+], 2433379703941putative chitinase 
10Rahaq2_457715702..16244 [+], 543379703942hypothetical protein 
11Rahaq2_457816428..18251 [+], 1824379703943hypothetical protein 
12Rahaq2_457918251..18622 [+], 372379703944hypothetical protein 
13Rahaq2_458119315..19557 [+], 243379703945hypothetical protein 
14Rahaq2_458219621..19884 [+], 264379703946hypothetical protein  PAAR
15Rahaq2_458319887..21089 [+], 1203379703947hypothetical protein 
16Rahaq2_458421086..24502 [+], 3417379703948hypothetical protein  TssM
17Rahaq2_458524602..26371 [+], 1770379703949type VI secretion protein  TssF
18Rahaq2_458626335..27417 [+], 1083379703950type VI secretion protein  TssG
19Rahaq2_458727481..28023 [+], 543379703951type VI secretion lipoprotein  TssJ
20Rahaq2_458828036..30391 [+], 2356379703952Rhs element Vgr protein  TssI
21Rahaq2_458930412..30897 [+], 486379703953hypothetical protein 
22Rahaq2_459030926..31282 [+], 357379703954hypothetical protein 
23Rahaq2_459131275..31946 [+], 672379703955hypothetical protein 
24Rahaq2_459231955..32647 [+], 693379703956hypothetical protein 
25Rahaq2_459533642..35246 [+], 1605379703957type VI secretion-associated protein  TssA
26Rahaq2_459635265..35696 [+], 432379703958type VI secretion system lysozyme-like protein  TssE
27Rahaq2_459735857..36666 [+], 810379703959hypothetical protein 
28Rahaq2_459836749..38146 [+], 1398379703960hypothetical protein  TssA
29Rahaq2_459938212..38682 [+], 471379703961hypothetical protein 
30Rahaq2_460039230..40654 [+], 1425379703962cytochrome bd-type quinol oxidase subunit 1 
31Rahaq2_460140657..41664 [+], 1008379703963cytochrome d oxidase cyd subunit II 
32Rahaq2_460241676..41840 [+], 165379703964hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Rahaq2_463070919..71401 [+], 483379703991type VI secretion system effector EC042_4529

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Proteins        Genes