I. Summary

SecReT6 ID	546
Strain	Rahnella aquatilis CIP 78.65 = ATCC 33071
Replicon	plasmid pRahaq201 [Browse all T6SS(s) in this replicon]
Accession	NC_016835
Location	316147..334310
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	2	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Rahaq2_4857	311310..311753 [-], 444	379704209	putative ester cyclase
2	Rahaq2_4858	311872..312786 [+], 915	379704210	transcriptional regulator
3	Rahaq2_4859	312875..313735 [-], 861	379704211	putative oxidoreductase, aryl-alcohol dehydrogenase like protein
4	Rahaq2_4860	313831..314766 [+], 936	379704212	transcriptional regulator
5	Rahaq2_4862	315069..315644 [-], 576	379704213	hypothetical protein
6	Rahaq2_4863	316147..316626 [+], 480	379704214	type VI secretion protein	TssB
7	Rahaq2_4864	316623..318104 [+], 1482	379704215	type VI secretion protein EvpB	TssC
8	Rahaq2_4865	318129..318623 [+], 495	379704216	hemolysin-coregulated protein	TssD
9	Rahaq2_4866	318677..319093 [+], 417	379704217	hypothetical protein	TssE
10	Rahaq2_4867	319106..320908 [+], 1803	379704218	type VI secretion protein	TssF
11	Rahaq2_4868	320899..321846 [+], 948	379704219	type VI secretion protein	TssG
12	Rahaq2_4869	321850..323763 [+], 1914	379704220	Rhs element Vgr protein	TssI
13	Rahaq2_4870	323777..324292 [+], 516	379704221	hypothetical protein
14	Rahaq2_4871	324292..324591 [+], 300	379704222	hypothetical protein	PAAR
15	Rahaq2_4872	324603..325667 [+], 1065	379704223	type VI secretion-associated protein, ImpA family	TssA
16	Rahaq2_4873	325694..326239 [+], 546	379704224	hypothetical protein	TssJ
17	Rahaq2_4874	326239..327633 [+], 1395	379704225	type VI secretion protein	TssK
18	Rahaq2_4875	327630..328253 [+], 624	379704226	hypothetical protein	TssL
19	Rahaq2_4876	328257..331694 [+], 3438	379704227	hypothetical protein	TssM
20	Rahaq2_4877	331740..334310 [+], 2571	379704228	type VI secretion ATPase, ClpV1 family	TssH
21	Rahaq2_4878	334331..335668 [+], 1338	379704229	hypothetical protein	TssA
22	Rahaq2_4879	335739..336494 [+], 756	379704230	hypothetical protein
23	Rahaq2_4880	336657..338531 [+], 1875	379704231	potassium uptake protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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