SecReT6
I. Summary
SecReT6 ID547 insolico
StrainRahnella aquatilis CIP 78.65 = ATCC 33071
Repliconplasmid pRahaq201 [Browse all T6SS(s) in this replicon]
AccessionNC_016835
Location457520..463831
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011001100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Rahaq2_4985454772..454909 [-], 138379704333hypothetical protein 
2Rahaq2_4986455123..456670 [-], 1548379704334methyl-accepting chemotaxis protein 
3Rahaq2_4987457520..458014 [+], 495379704335type VI secretion protein  TssB
4Rahaq2_4988458052..459593 [+], 1542379704336type VI secretion protein EvpB  TssC
5Rahaq2_4989459609..460958 [+], 1350379704337hypothetical protein  TssK
6Rahaq2_4990460955..461629 [+], 675379704338DotU family type IV/VI secretion system protein  TssL
7Rahaq2_4991461631..463307 [+], 1677379704339outer membrane protein/peptidoglycan-associated (lipo)protein  TagL
8Rahaq2_4992463340..463831 [+], 492379704340type VI secretion system effector  TssD
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Rahaq2_4992463340..463831 [+], 492379704340type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A