I. Summary
SecReT6 ID548 insolico
StrainKlebsiella pneumoniae subsp. pneumoniae HS11286
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KPHS_229302322412..2322621 [+], 210378978452hypothetical protein 
2KPHS_229402323071..2324558 [+], 1488378978453putative reverse transcriptase/maturase 
3KPHS_229502325143..2325391 [-], 249378978454DinI family protein 
4KPHS_229602325956..2326078 [+], 123378978455hypothetical protein 
5KPHS_229702326237..2326728 [+], 492378978456hypothetical protein  TssB
6KPHS_229802326771..2328315 [+], 1545378978457EvpB/family type VI secretion protein  TssC
7KPHS_229902328325..2329668 [+], 1344378978458hypothetical protein  TssK
8KPHS_230002329665..2330354 [+], 690378978459hypothetical protein  TssL
9KPHS_230102330351..2332057 [+], 1707378978460OmpA/MotB domain-containing protein  TagL
10KPHS_230202332062..2332553 [+], 492378978461hypothetical protein  TssD
11KPHS_230302332818..2335472 [+], 2655378978462putative protease  TssH
12KPHS_230402335474..2337843 [+], 2370378978463Rhs element Vgr protein  TssI
13KPHS_230502337844..2338623 [+], 780378978464hypothetical protein 
14KPHS_230602338687..2339217 [+], 531378978465putative lipoprotein 
15KPHS_230702339286..2339816 [+], 531378978466putative lipoprotein 
16KPHS_230802339884..2340414 [+], 531378978467putative lipoprotein 
17KPHS_230902340482..2341012 [+], 531378978468putative lipoprotein 
18KPHS_231002341000..2342034 [+], 1035378978469hypothetical protein 
19KPHS_231102342120..2343418 [+], 1299378978470hypothetical protein 
20KPHS_231202343463..2343720 [+], 258378978471PaaR repeat-containing protein  PAAR
21KPHS_231302343717..2344856 [+], 1140378978472hypothetical protein 
22KPHS_231402344840..2348265 [+], 3426378978473ImcF domain-containing protein  TssM
23KPHS_231502348265..2348672 [+], 408378978474type VI secretion-associated protein  TssA
24KPHS_231602348724..2349857 [+], 1134378978475type VI secretion-associated protein 
25KPHS_231702349937..2351691 [+], 1755378978476hypothetical protein  TssF
26KPHS_231802351655..2352740 [+], 1086378978477hypothetical protein  TssG
27KPHS_231902352718..2353260 [+], 543378978478hypothetical protein  TssJ
28KPHS_232002353231..2353359 [-], 129378978479hypothetical protein 
29KPHS_232102353389..2353883 [+], 495378978480hypothetical protein 
30KPHS_232202353950..2354663 [-], 714378978481oxidoreductase 
31KPHS_232302354737..2355330 [+], 594378978482putative regulatory protein TetR 
32KPHS_232402355335..2356090 [-], 756378978483putative dehydrogenase/reductase oxidoreductase protein 
33KPHS_232502356249..2357127 [+], 879378978484putative ARAC-type regulatory protein 
34KPHS_232602357178..2357384 [-], 207378978485hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1KPHS_230202332062..2332553 [+], 492378978461hypothetical protein EC042_4529

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Proteins        Genes