SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	555
Strain	Escherichia coli KO11FL
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_016902
Location	970556..1004683
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	3	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	EKO11_0924	966968..968221 [+], 1254	378711736	cell wall hydrolase/autolysin
2	EKO11_0925	968567..969115 [-], 549	378711737	hypothetical protein
3	EKO11_0926	969180..970556 [-], 1377	378711738	ImpA domain-containing protein	TssA
4	EKO11_0927	970556..970984 [-], 429	378711739	type VI secretion system lysozyme-like protein	TssE
5	EKO11_0928	970988..971524 [-], 537	378711740	type VI secretion lipoprotein	TssJ
6	EKO11_0929	971505..972584 [-], 1080	378711741	type VI secretion protein	TssG
7	EKO11_0930	972548..974308 [-], 1761	378711742	type VI secretion protein	TssF
8	EKO11_0931	974868..975290 [-], 423	378711743	hypothetical protein
9	EKO11_0933	976316..976627 [+], 312	378711744	transposase IS3/IS911 family protein
10	EKO11_0935	977968..979326 [-], 1359	378711745	type VI secretion-associated protein	TssA
11	EKO11_0937	979871..979978 [-], 108	378711746	hypothetical protein
12	EKO11_0938	980428..981345 [-], 918	378711747	hypothetical protein	PAAR
13	EKO11_0939	981351..982988 [-], 1638	378711748	type VI secretion-associated protein	TssA
14	EKO11_0940	982954..986343 [-], 3390	378711749	ImcF domain-containing protein	TssM
15	EKO11_0941	986343..987557 [-], 1215	378711750	hypothetical protein
16	EKO11_0942	987635..988117 [-], 483	378711751	hypothetical protein
17	EKO11_0944	988810..991317 [-], 2508	378711752	Rhs element Vgr protein	TssI
18	EKO11_0945	991642..992178 [-], 537	378711753	hypothetical protein
19	EKO11_0946	992168..993019 [-], 852	378711754	hypothetical protein
20	EKO11_0947	993021..995507 [-], 2487	378711755	Rhs element Vgr protein	TssI
21	EKO11_0948	995519..998164 [-], 2646	378711756	type VI secretion ATPase, ClpV1 family	TssH
22	EKO11_0949	998355..998846 [-], 492	378711757	type VI secretion system effector	TssD
23	EKO11_0950	998904..1000556 [-], 1653	378711758	OmpA/MotB domain-containing protein	TagL
24	EKO11_0951	1000569..1001234 [-], 666	378711759	DotU family type IV / VI secretion system protein	TssL
25	EKO11_0952	1001231..1002568 [-], 1338	378711760	type VI secretion protein	TssK
26	EKO11_0953	1002586..1004124 [-], 1539	378711761	type VI secretion protein EvpB	TssC
27	EKO11_0954	1004183..1004683 [-], 501	378711762	type VI secretion protein	TssB
28	EKO11_0956	1006777..1007583 [+], 807	378711763	UBA/THIF-type NAD/FAD binding protein
29	EKO11_0957	1007634..1008077 [-], 444	378711764	cysteine desulfurase, sulfur acceptor subunit CsdE
30	EKO11_0958	1008077..1009282 [-], 1206	378711765	class V aminotransferase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	EKO11_0949	998355..998846 [-], 492	378711757	type VI secretion system effector	EC042_4529

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Proteins Genes

N/A