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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | COCOR_04137 | 5154775..5156490 [+], 1716 | 383456120 | AMP-dependent synthetase and ligase | |
2 | COCOR_04138 | 5156506..5156892 [+], 387 | 383456121 | hypothetical protein | |
3 | COCOR_04139 | 5156885..5157961 [+], 1077 | 383456122 | hypothetical protein | |
4 | COCOR_04140 | 5157967..5158863 [+], 897 | 383456123 | hypothetical protein | |
5 | COCOR_04141 | 5159000..5159644 [+], 645 | 383456124 | hypothetical protein | TssB |
6 | COCOR_04142 | 5159686..5161173 [+], 1488 | 383456125 | hypothetical protein | TssC |
7 | COCOR_04143 | 5161229..5161813 [+], 585 | 383456126 | hypothetical protein | |
8 | COCOR_04144 | 5161900..5163150 [+], 1251 | 383456127 | hypothetical protein | TssK |
9 | COCOR_04145 | 5163156..5163545 [+], 390 | 383456128 | Gpw/Gp25 family protein | TssE |
10 | COCOR_04146 | 5163545..5165239 [+], 1695 | 383456129 | hypothetical protein | |
11 | COCOR_04147 | 5165253..5165879 [+], 627 | 383456130 | hypothetical protein | |
12 | COCOR_04148 | 5165932..5167578 [+], 1647 | 383456131 | hypothetical protein | TssF |
13 | COCOR_04149 | 5167591..5168232 [+], 642 | 383456132 | hypothetical protein | TssL |
14 | COCOR_04150 | 5168229..5168546 [+], 318 | 383456133 | hypothetical protein | |
15 | COCOR_04151 | 5168548..5172369 [+], 3822 | 383456134 | hypothetical protein | TssM |
16 | COCOR_04152 | 5172366..5172878 [+], 513 | 383456135 | hypothetical protein | |
17 | COCOR_04153 | 5172882..5175005 [-], 2124 | 383456136 | hypothetical protein | |
18 | COCOR_04154 | 5175002..5176927 [-], 1926 | 383456137 | hypothetical protein | |
19 | COCOR_04155 (nfrB1) | 5176935..5177618 [-], 684 | 383456138 | general secretion pathway protein E | |
20 | COCOR_04156 | 5177779..5178615 [+], 837 | 383456139 | putative lipoprotein | |
21 | COCOR_04157 (ybiR) | 5178612..5179859 [-], 1248 | 383456140 | arsenical pump membrane protein | |
22 | COCOR_04158 (yprA) | 5180044..5182464 [+], 2421 | 383456141 | DEAD/DEAH box helicase | |
23 | COCOR_04159 | 5182481..5184058 [+], 1578 | 383456142 | hypothetical protein | |
24 | COCOR_04160 | 5184415..5184612 [+], 198 | 383456143 | hypothetical protein | |
25 | COCOR_04161 | 5184662..5185258 [-], 597 | 383456144 | hypothetical protein | |
26 | COCOR_04162 | 5185374..5186018 [-], 645 | 383456145 | hypothetical protein | |
27 | COCOR_04163 (oprF1) | 5186293..5187615 [+], 1323 | 383456146 | OmpA domain-containing protein | TagL |
28 | COCOR_04164 | 5187678..5189021 [+], 1344 | 383456147 | WGR domain-containing protein | |
29 | COCOR_04165 | 5189031..5190155 [+], 1125 | 383456148 | hypothetical protein | |
30 | COCOR_04166 | 5190122..5191021 [-], 900 | 383456149 | radical SAM domain-containing protein | |
31 | COCOR_04167 (hemN1) | 5191018..5192331 [-], 1314 | 383456150 | coproporphyrinogen III oxidase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein