SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	558
Strain	Corallococcus coralloides DSM 2259
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017030
Location	5159000..5187615
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	0	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	COCOR_04137	5154775..5156490 [+], 1716	383456120	AMP-dependent synthetase and ligase
2	COCOR_04138	5156506..5156892 [+], 387	383456121	hypothetical protein
3	COCOR_04139	5156885..5157961 [+], 1077	383456122	hypothetical protein
4	COCOR_04140	5157967..5158863 [+], 897	383456123	hypothetical protein
5	COCOR_04141	5159000..5159644 [+], 645	383456124	hypothetical protein	TssB
6	COCOR_04142	5159686..5161173 [+], 1488	383456125	hypothetical protein	TssC
7	COCOR_04143	5161229..5161813 [+], 585	383456126	hypothetical protein
8	COCOR_04144	5161900..5163150 [+], 1251	383456127	hypothetical protein	TssK
9	COCOR_04145	5163156..5163545 [+], 390	383456128	Gpw/Gp25 family protein	TssE
10	COCOR_04146	5163545..5165239 [+], 1695	383456129	hypothetical protein
11	COCOR_04147	5165253..5165879 [+], 627	383456130	hypothetical protein
12	COCOR_04148	5165932..5167578 [+], 1647	383456131	hypothetical protein	TssF
13	COCOR_04149	5167591..5168232 [+], 642	383456132	hypothetical protein	TssL
14	COCOR_04150	5168229..5168546 [+], 318	383456133	hypothetical protein
15	COCOR_04151	5168548..5172369 [+], 3822	383456134	hypothetical protein	TssM
16	COCOR_04152	5172366..5172878 [+], 513	383456135	hypothetical protein
17	COCOR_04153	5172882..5175005 [-], 2124	383456136	hypothetical protein
18	COCOR_04154	5175002..5176927 [-], 1926	383456137	hypothetical protein
19	COCOR_04155 (nfrB1)	5176935..5177618 [-], 684	383456138	general secretion pathway protein E
20	COCOR_04156	5177779..5178615 [+], 837	383456139	putative lipoprotein
21	COCOR_04157 (ybiR)	5178612..5179859 [-], 1248	383456140	arsenical pump membrane protein
22	COCOR_04158 (yprA)	5180044..5182464 [+], 2421	383456141	DEAD/DEAH box helicase
23	COCOR_04159	5182481..5184058 [+], 1578	383456142	hypothetical protein
24	COCOR_04160	5184415..5184612 [+], 198	383456143	hypothetical protein
25	COCOR_04161	5184662..5185258 [-], 597	383456144	hypothetical protein
26	COCOR_04162	5185374..5186018 [-], 645	383456145	hypothetical protein
27	COCOR_04163 (oprF1)	5186293..5187615 [+], 1323	383456146	OmpA domain-containing protein	TagL
28	COCOR_04164	5187678..5189021 [+], 1344	383456147	WGR domain-containing protein
29	COCOR_04165	5189031..5190155 [+], 1125	383456148	hypothetical protein
30	COCOR_04166	5190122..5191021 [-], 900	383456149	radical SAM domain-containing protein
31	COCOR_04167 (hemN1)	5191018..5192331 [-], 1314	383456150	coproporphyrinogen III oxidase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A