 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | UMN798_0284 (mltD) | 299912..301132 [-], 1221 | 383495078 | membrane-bound lytic murein transglycosylase d precursor | |
2 | UMN798_0285 (gloB) | 301351..302106 [-], 756 | 383495079 | hydroxyacylglutathione hydrolase | |
3 | UMN798_0286 | 302195..302863 [+], 669 | 383495080 | hypothetical protein | |
4 | UMN798_0287 (rnhA) | 302860..303327 [-], 468 | 383495081 | ribonuclease H | |
5 | UMN798_0288 (dnaQ) | 303382..304122 [+], 741 | 383495082 | DNA polymerase III subunit epsilon | |
6 | UMN798_0290 (sciA) | 304654..305703 [-], 1050 | 383495083 | SPI-6 associated protein | TssA |
7 | UMN798_0291 (sciB) | 305720..306715 [-], 996 | 383495084 | SPI-6 associated protein | TssG |
8 | UMN798_0292 (sciC) | 306712..308595 [-], 1884 | 383495085 | SPI-6 associated protein | TssF |
9 | UMN798_0293 (sciD) | 308611..309105 [-], 495 | 383495086 | SPI-6 associated protein | TssE |
10 | UMN798_0294 (sciE) | 309102..309926 [-], 825 | 383495087 | SPI-6 associated protein | TagJ |
11 | UMN798_0295 (sciF) | 309913..310815 [-], 903 | 383495088 | SPI-6 associated protein | |
12 | UMN798_0296 (sciG) | 311183..313822 [+], 2640 | 383495089 | SPI-6 associated protein | TssH |
13 | UMN798_0297 (sciH) | 313922..314464 [+], 543 | 383495090 | SPI-6 associated protein | TssB |
14 | UMN798_0298 (sciI) | 314488..315981 [+], 1494 | 383495091 | SPI-6 associated protein | TssC |
15 | UMN798_0300 (sciK) | 316867..317352 [+], 486 | 383495092 | SPI-6 associated protein | TssD |
16 | UMN798_0301 | 317702..318142 [+], 441 | 383495093 | SPI-6 associated protein | STM0277 (e) |
17 | UMN798_0302 | 318178..318510 [+], 333 | 383495094 | SPI-6 associated protein | STM0278 (i) |
18 | UMN798_0303 (sciK1) | 318653..319138 [+], 486 | 383495095 | SPI-6 associated protein | TssD |
19 | UMN798_0304 (sciN) | 319250..319741 [+], 492 | 383495096 | lipoprotein (SPI-6 associated) | TssJ |
20 | UMN798_0305 (sciO) | 319745..321088 [+], 1344 | 383495097 | SPI-6 associated protein | TssK |
21 | UMN798_0306 (sciP) | 321085..322389 [+], 1305 | 383495098 | membrane protein (SPI-6 associated) | TssL |
22 | UMN798_0307 (sciQ) | 322394..323167 [+], 774 | 383495099 | membrane protein, virulence associated protein | |
23 | UMN798_0308 (sciR) | 323445..323801 [+], 357 | 383495100 | SPI-6 associated protein | |
24 | UMN798_0309 (sciS) | 323835..327704 [+], 3870 | 383495101 | IcmF-related integral membrane ATP-binding protein, virulence associated protein | TssM |
25 | UMN798_0310 (sciT) | 327719..328492 [+], 774 | 383495102 | SPI-6 associated protein | |
26 | UMN798_0311 (sciU) | 328489..328905 [+], 417 | 383495103 | hypothetical protein | |
27 | UMN798_0312 (sciV) | 328929..329450 [+], 522 | 383495104 | SPI-6 associated protein | |
28 | UMN798_0314 (vrgS) | 329847..332036 [+], 2190 | 383495105 | type VI secretion protein | TssI |
29 | UMN798_0315 (sciW) | 332060..332506 [+], 447 | 383495106 | SPI-6 associated protein | |
30 | UMN798_0316 | 332525..333820 [+], 1296 | 383495107 | Rhs-family protein (SPI-6 associated) | PAAR |
31 | UMN798_0317 | 333833..336121 [+], 2289 | 383495108 | Rhs-family protein (SPI-6 associated) | |
32 | UMN798_0318 | 336115..336378 [+], 264 | 383495109 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein