SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	561
Strain	Rahnella aquatilis HX2
Replicon	plasmid PRA1 [Browse all T6SS(s) in this replicon]
Accession	NC_017060
Location	121369..158855
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Q7S_23326	117356..118903 [+], 1548	384527695	methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
2	Q7S_23331	118976..120523 [-], 1548	384527696	methyl-accepting chemotaxis sensory transducer
3	Q7S_23336	121369..121863 [+], 495	384527697	type VI secretion protein	TssB
4	Q7S_23341	121895..123442 [+], 1548	384527698	type VI secretion protein EvpB	TssC
5	Q7S_23346	123494..124807 [+], 1314	384527699	type VI secretion protein	TssK
6	Q7S_23351	124804..125478 [+], 675	384527700	DotU family type IV / VI secretion system protein	TssL
7	Q7S_23356	125480..127156 [+], 1677	384527701	OmpA/MotB domain-containing protein	TagL
8	Q7S_23361	127189..127680 [+], 492	384527702	type VI secretion system effector	TssD
9	Q7S_23366	127843..130497 [+], 2655	384527703	type VI secretion ATPase, ClpV1 family protein	TssH
10	Q7S_23371	130494..132836 [+], 2343	384527704	Rhs element Vgr protein	TssI
11	Q7S_23376	132951..133466 [+], 516	384527705	hypothetical protein
12	Q7S_23381	133483..136971 [+], 3489	384527706	hypothetical protein
13	Q7S_23386	136987..137544 [+], 558	384527707	hypothetical protein
14	Q7S_23391	137560..138009 [+], 450	384527708	hypothetical protein
15	Q7S_23396	138037..138567 [+], 531	384527709	hypothetical protein
16	Q7S_23401	138629..138892 [+], 264	384527710	hypothetical protein	PAAR
17	Q7S_23406	138895..140106 [+], 1212	384527711	hypothetical protein
18	Q7S_23411	140103..143519 [+], 3417	384527712	ImcF domain-containing protein	TssM
19	Q7S_23416	143619..145388 [+], 1770	384527713	type VI secretion system protein ImpG	TssF
20	Q7S_23421	145352..146434 [+], 1083	384527714	type VI secretion protein	TssG
21	Q7S_23426	146498..147040 [+], 543	384527715	type VI secretion lipoprotein	TssJ
22	Q7S_23451	151037..151876 [+], 840	384527716	ImpA domain-containing protein
23	Q7S_23456	152173..153222 [+], 1050	384527717	ImpA domain-containing protein
24	Q7S_23461	153312..154151 [+], 840	384527718	hypothetical protein
25	Q7S_23466	154352..155956 [+], 1605	384527719	type VI secretion-associated protein	TssA
26	Q7S_23471	155976..156407 [+], 432	384527720	type VI secretion system lysozyme-like protein	TssE
27	Q7S_23476	156569..157378 [+], 810	384527721	secreted protein
28	Q7S_23481	157461..158855 [+], 1395	384527722	ImpA domain-containing protein	TssA
29	Q7S_23486	158905..159375 [+], 471	384527723	hypothetical protein
30	Q7S_23491	159923..161347 [+], 1425	384527724	cytochrome bd ubiquinol oxidase subunit I
31	Q7S_23496	161350..162357 [+], 1008	384527725	cytochrome d ubiquinol oxidase, subunit II
32	Q7S_23501	162369..162533 [+], 165	384527726	hypothetical protein
33	Q7S_23506	162766..163344 [-], 579	384527727	TetR family transcriptional regulator

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Q7S_23361	127189..127680 [+], 492	384527702	type VI secretion system effector	EC042_4529

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Proteins Genes

N/A