SecReT6
I. Summary
SecReT6 ID562 insolico
StrainRahnella aquatilis HX2
Repliconplasmid PRA1 [Browse all T6SS(s) in this replicon]
AccessionNC_017060
Location365085..380200
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000100001
ComponentTssGTssJTssKTssM
Number1100
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1Q7S_24491361444..362505 [+], 1062384527924binding-protein-dependent transport system inner membrane protein 
2Q7S_24496362502..363407 [+], 906384527925binding-protein-dependent transport system inner membrane protein 
3Q7S_24501363400..364245 [+], 846384527926ABC transporter 
4Q7S_24506364270..365040 [+], 771384527927ABC transporter 
5Q7S_24511365085..366170 [-], 1086384527928type VI secretion protein  TssG
6Q7S_24516366134..367909 [-], 1776384527929type VI secretion protein  TssF
7Q7S_24521367909..368442 [-], 534384527930type VI secretion lipoprotein  TssJ
8Q7S_24536371782..373194 [-], 1413384527931hypothetical protein 
9Q7S_24541373194..373448 [-], 255384527932hypothetical protein  PAAR
10Q7S_24546373472..373942 [-], 471384527933hypothetical protein 
11Q7S_24551373952..374701 [-], 750384527934Sel1 domain-containing protein repeat-containing protein 
12Q7S_24556374768..375517 [-], 750384527935hypothetical protein 
13Q7S_24561375528..377690 [-], 2163384527936hypothetical protein 
14Q7S_24566377693..380200 [-], 2508384527937Rhs element Vgr protein  TssI
15Q7S_24571380635..381615 [+], 981384527938MarR family transcriptional regulator 
16Q7S_24576381632..383419 [-], 1788384527939binding-protein-dependent transport system inner membrane protein 
17Q7S_24581383419..384927 [-], 1509384527940family 5 extracellular solute-binding protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1Q7S_23696201204..201686 [+], 483384527765type VI secretion system effector EC042_4529

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Proteins        Genes
N/A
N/A