I. Summary

SecReT6 ID	562
Strain	Rahnella aquatilis HX2
Replicon	plasmid PRA1 [Browse all T6SS(s) in this replicon]
Accession	NC_017060
Location	365085..380200
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	0	1	0	0	0	0	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	0	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Q7S_24491	361444..362505 [+], 1062	384527924	binding-protein-dependent transport system inner membrane protein
2	Q7S_24496	362502..363407 [+], 906	384527925	binding-protein-dependent transport system inner membrane protein
3	Q7S_24501	363400..364245 [+], 846	384527926	ABC transporter
4	Q7S_24506	364270..365040 [+], 771	384527927	ABC transporter
5	Q7S_24511	365085..366170 [-], 1086	384527928	type VI secretion protein	TssG
6	Q7S_24516	366134..367909 [-], 1776	384527929	type VI secretion protein	TssF
7	Q7S_24521	367909..368442 [-], 534	384527930	type VI secretion lipoprotein	TssJ
8	Q7S_24536	371782..373194 [-], 1413	384527931	hypothetical protein
9	Q7S_24541	373194..373448 [-], 255	384527932	hypothetical protein	PAAR
10	Q7S_24546	373472..373942 [-], 471	384527933	hypothetical protein
11	Q7S_24551	373952..374701 [-], 750	384527934	Sel1 domain-containing protein repeat-containing protein
12	Q7S_24556	374768..375517 [-], 750	384527935	hypothetical protein
13	Q7S_24561	375528..377690 [-], 2163	384527936	hypothetical protein
14	Q7S_24566	377693..380200 [-], 2508	384527937	Rhs element Vgr protein	TssI
15	Q7S_24571	380635..381615 [+], 981	384527938	MarR family transcriptional regulator
16	Q7S_24576	381632..383419 [-], 1788	384527939	binding-protein-dependent transport system inner membrane protein
17	Q7S_24581	383419..384927 [-], 1509	384527940	family 5 extracellular solute-binding protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	Q7S_23696	201204..201686 [+], 483	384527765	type VI secretion system effector	EC042_4529

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Proteins        Genes

N/A

N/A