I. Summary

SecReT6 ID	563
Strain	Rahnella aquatilis HX2
Replicon	plasmid PRA1 [Browse all T6SS(s) in this replicon]
Accession	NC_017060
Location	501490..521006
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	Q7S_25101	496682..497617 [-], 936	384528042	glycosyl transferase family protein
2	Q7S_25106	497842..498861 [-], 1020	384528043	glycosyl transferase family protein
3	Q7S_25111	499213..500184 [+], 972	384528044	LysR family transcriptional regulator
4	Q7S_25116	500189..500764 [-], 576	384528045	hypothetical protein
5	Q7S_25121	501490..501969 [+], 480	384528046	type VI secretion protein	TssB
6	Q7S_25126	501966..503447 [+], 1482	384528047	type VI secretion protein EvpB	TssC
7	Q7S_25131	503477..503968 [+], 492	384528048	hypothetical protein	TssD
8	Q7S_25136	504021..504437 [+], 417	384528049	GPW/gp25 family protein	TssE
9	Q7S_25141	504450..506252 [+], 1803	384528050	type VI secretion protein	TssF
10	Q7S_25146	506243..507190 [+], 948	384528051	type VI secretion protein	TssG
11	Q7S_25151	507194..509083 [+], 1890	384528052	ImpA family type VI secretion-associated protein	TssI
12	Q7S_25156	509097..509612 [+], 516	384528053	hypothetical protein
13	Q7S_25161	509612..509911 [+], 300	384528054	PAAR repeat-containing protein	PAAR
14	Q7S_25166	509929..510987 [+], 1059	384528055	type VI secretion-associated protein, ImpA family	TssA
15	Q7S_25171	510984..511559 [+], 576	384528056	type VI secretion lipoprotein	TssJ
16	Q7S_25176	511559..512953 [+], 1395	384528057	type VI secretion protein	TssK
17	Q7S_25181	512953..513576 [+], 624	384528058	type IV / VI secretion system, DotU	TssL
18	Q7S_25186	513583..517020 [+], 3438	384528059	hypothetical protein	TssM
19	Q7S_25191	517066..519636 [+], 2571	384528060	type VI secretion ATPase, ClpV1 family protein	TssH
20	Q7S_25196	519657..521006 [+], 1350	384528061	hypothetical protein	TssA
21	Q7S_25201	521045..521758 [+], 714	384528062	hypothetical protein
22	Q7S_25206 (trkD)	521954..523828 [+], 1875	384528063	potassium transport protein Kup
23	Q7S_25211	523880..524638 [-], 759	384528064	hypothetical protein
24	Q7S_25216	524793..525680 [+], 888	384528065	beta-lactamase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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