I. Summary
SecReT6 ID564 insolico
StrainMarinobacter hydrocarbonoclasticus ATCC 49840
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1MARHY36183738923..3742981 [-], 4059387816000hypothetical protein 
2MARHY36193743003..3743542 [-], 540387816001hypothetical protein 
3MARHY36203743561..3745666 [-], 2106387816002Rhs element Vgr protein  TssI
4MARHY36213745788..3749381 [-], 3594387816003IcmF-like protein  TssM
5MARHY36223749409..3750857 [-], 1449387816004hypothetical protein  TssA
6MARHY36233750869..3751471 [-], 603387816005hypothetical protein 
7MARHY36243751501..3753066 [-], 1566387816006regulator , Helix-turn-helix domain, Sigma-54 factor interaction region 
8MARHY36253753406..3756093 [-], 2688387816007ClpA/B-type chaperone (evpH-like)  TssH
9MARHY36263756059..3756880 [-], 822387816008hypothetical protein  TssL
10MARHY36273756884..3758218 [-], 1335387816009hypothetical protein  TssK
11MARHY36283758218..3758751 [-], 534387816010hypothetical protein  TssJ
12MARHY36293758748..3760058 [-], 1311387816011hypothetical protein  Fha
13MARHY36303760076..3761092 [-], 1017387816012hypothetical protein  TssG
14MARHY36313761056..3762828 [-], 1773387816013hypothetical protein  TssF
15MARHY36323762898..3763071 [-], 174387816014hypothetical protein 
16MARHY36333763127..3763564 [-], 438387816015hypothetical protein  TssE
17MARHY36343763568..3765049 [-], 1482387816016secretion system protein (EvpB-like)  TssC
18MARHY36353765111..3765608 [-], 498387816017secretion system protein (EvpA-like)  TssB
19MARHY36363765709..3765882 [-], 174387816018hypothetical protein 
20MARHY3637 (dbI)3765881..3766141 [+], 261387816019acyl-CoA-binding protein (ACBP) (Diazepam-binding inhibitor) (DBI) (Endozepine) (EP) 
21MARHY36383766266..3766580 [+], 315387816020hypothetical protein 
22MARHY36393766603..3766986 [-], 384387816021hypothetical protein 
23MARHY3640 (greB)3767166..3767681 [-], 516387816022transcription elongation factor GreB 
24MARHY36413767684..3767938 [+], 255387816023hypothetical protein 
25MARHY36423767957..3768244 [+], 288387816024hypothetical protein 
26MARHY36433768247..3769725 [-], 1479387816025two-component sensor histidine kinase signal transduction 
27MARHY3644 (cusR)3769712..3770392 [-], 681387816026DNA-binding response regulator in two-component transcriptional regulatory system, regulation of copper resistance 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1MARHY0176(hcpC)198281..198799 [-], 519387812626hypothetical protein ECA2866

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Proteins        Genes