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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | RGE_25560 | 2689014..2690267 [-], 1254 | 383758411 | major facilitator superfamily protein | |
2 | RGE_25570 | 2690594..2691616 [+], 1023 | 383758412 | AraC family transcriptional regulator | |
3 | RGE_25600 | 2692824..2693438 [-], 615 | 383758413 | hypothetical protein | TssI |
4 | RGE_25610 | 2693411..2693677 [-], 267 | 383758414 | hypothetical protein | |
5 | RGE_25620 | 2694162..2695052 [-], 891 | 383758415 | hypothetical protein | |
6 | RGE_25630 | 2695102..2696280 [-], 1179 | 383758416 | hypothetical protein | |
7 | RGE_25640 | 2696682..2697641 [-], 960 | 383758417 | transposase, IS4 family protein | |
8 | RGE_25650 | 2698043..2698204 [-], 162 | 383758418 | hypothetical protein | |
9 | RGE_25660 | 2698870..2699685 [-], 816 | 383758419 | hypothetical protein | |
10 | RGE_25670 | 2699672..2700697 [-], 1026 | 383758420 | hypothetical protein | |
11 | RGE_25680 | 2701053..2704103 [-], 3051 | 383758421 | hypothetical protein | TssI |
12 | RGE_25690 | 2704100..2704423 [-], 324 | 383758422 | hypothetical protein | |
13 | RGE_25700 (clpV) | 2704453..2707116 [-], 2664 | 383758423 | type VI secretion ATPase, ClpV1 family | TssH |
14 | RGE_25710 | 2707126..2708196 [-], 1071 | 383758424 | hypothetical protein | TssG |
15 | RGE_25720 | 2708160..2710007 [-], 1848 | 383758425 | hypothetical protein | TssF |
16 | RGE_25730 | 2710004..2710489 [-], 486 | 383758426 | hypothetical protein | TssE |
17 | RGE_25740 | 2710561..2711100 [-], 540 | 383758427 | hypothetical protein | TssD |
18 | RGE_25750 | 2711152..2712630 [-], 1479 | 383758428 | hypothetical protein | TssC |
19 | RGE_25760 | 2712636..2713151 [-], 516 | 383758429 | hypothetical protein | TssB |
20 | RGE_25770 | 2713205..2713777 [-], 573 | 383758430 | hypothetical protein | |
21 | RGE_25780 | 2714171..2714773 [+], 603 | 383758431 | putative lipoprotein | TssJ |
22 | RGE_25790 | 2714794..2716143 [+], 1350 | 383758432 | hypothetical protein | TssK |
23 | RGE_25800 | 2716150..2716947 [+], 798 | 383758433 | DotU family type IV / VI secretion system protein | TssL |
24 | RGE_25810 | 2716979..2719774 [+], 2796 | 383758434 | hypothetical protein | TssI |
25 | RGE_25820 | 2719749..2721143 [+], 1395 | 383758435 | hypothetical protein | |
26 | RGE_25830 | 2721140..2722078 [+], 939 | 383758436 | hypothetical protein | |
27 | RGE_25840 | 2722148..2722387 [+], 240 | 383758437 | hypothetical protein | |
28 | RGE_25850 | 2722384..2723607 [+], 1224 | 383758438 | hypothetical protein | |
29 | RGE_25860 | 2723607..2724653 [+], 1047 | 383758439 | hypothetical protein | TssA |
30 | RGE_25870 | 2724672..2725457 [-], 786 | 383758440 | OmpA/MotB family outer membrane protein | TagL |
31 | RGE_25880 | 2725457..2726446 [-], 990 | 383758441 | hypothetical protein | |
32 | RGE_25890 (icmF) | 2726443..2730252 [-], 3810 | 383758442 | type VI secretion protein IcmF | TssM |
33 | RGE_25900 | 2730278..2731633 [-], 1356 | 383758443 | hypothetical protein | |
34 | RGE_25910 | 2731767..2732033 [-], 267 | 383758444 | hypothetical protein | PAAR |
35 | RGE_25920 | 2732065..2732925 [-], 861 | 383758445 | peptidase M15C family protein | |
36 | RGE_25930 | 2733140..2733901 [+], 762 | 383758446 | hypothetical protein | |
37 | RGE_25940 | 2733898..2736903 [+], 3006 | 383758447 | hypothetical protein | TssI |
38 | RGE_25950 | 2736907..2738979 [+], 2073 | 383758448 | hypothetical protein | |
39 | RGE_25960 | 2739280..2740236 [+], 957 | 383758449 | hypothetical protein | |
40 | RGE_25970 | 2740322..2741380 [+], 1059 | 383758450 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein