SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	565
Strain	Rubrivivax gelatinosus IL144
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017075
Location	2692824..2736903
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	4	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	RGE_25560	2689014..2690267 [-], 1254	383758411	major facilitator superfamily protein
2	RGE_25570	2690594..2691616 [+], 1023	383758412	AraC family transcriptional regulator
3	RGE_25600	2692824..2693438 [-], 615	383758413	hypothetical protein	TssI
4	RGE_25610	2693411..2693677 [-], 267	383758414	hypothetical protein
5	RGE_25620	2694162..2695052 [-], 891	383758415	hypothetical protein
6	RGE_25630	2695102..2696280 [-], 1179	383758416	hypothetical protein
7	RGE_25640	2696682..2697641 [-], 960	383758417	transposase, IS4 family protein
8	RGE_25650	2698043..2698204 [-], 162	383758418	hypothetical protein
9	RGE_25660	2698870..2699685 [-], 816	383758419	hypothetical protein
10	RGE_25670	2699672..2700697 [-], 1026	383758420	hypothetical protein
11	RGE_25680	2701053..2704103 [-], 3051	383758421	hypothetical protein	TssI
12	RGE_25690	2704100..2704423 [-], 324	383758422	hypothetical protein
13	RGE_25700 (clpV)	2704453..2707116 [-], 2664	383758423	type VI secretion ATPase, ClpV1 family	TssH
14	RGE_25710	2707126..2708196 [-], 1071	383758424	hypothetical protein	TssG
15	RGE_25720	2708160..2710007 [-], 1848	383758425	hypothetical protein	TssF
16	RGE_25730	2710004..2710489 [-], 486	383758426	hypothetical protein	TssE
17	RGE_25740	2710561..2711100 [-], 540	383758427	hypothetical protein	TssD
18	RGE_25750	2711152..2712630 [-], 1479	383758428	hypothetical protein	TssC
19	RGE_25760	2712636..2713151 [-], 516	383758429	hypothetical protein	TssB
20	RGE_25770	2713205..2713777 [-], 573	383758430	hypothetical protein
21	RGE_25780	2714171..2714773 [+], 603	383758431	putative lipoprotein	TssJ
22	RGE_25790	2714794..2716143 [+], 1350	383758432	hypothetical protein	TssK
23	RGE_25800	2716150..2716947 [+], 798	383758433	DotU family type IV / VI secretion system protein	TssL
24	RGE_25810	2716979..2719774 [+], 2796	383758434	hypothetical protein	TssI
25	RGE_25820	2719749..2721143 [+], 1395	383758435	hypothetical protein
26	RGE_25830	2721140..2722078 [+], 939	383758436	hypothetical protein
27	RGE_25840	2722148..2722387 [+], 240	383758437	hypothetical protein
28	RGE_25850	2722384..2723607 [+], 1224	383758438	hypothetical protein
29	RGE_25860	2723607..2724653 [+], 1047	383758439	hypothetical protein	TssA
30	RGE_25870	2724672..2725457 [-], 786	383758440	OmpA/MotB family outer membrane protein	TagL
31	RGE_25880	2725457..2726446 [-], 990	383758441	hypothetical protein
32	RGE_25890 (icmF)	2726443..2730252 [-], 3810	383758442	type VI secretion protein IcmF	TssM
33	RGE_25900	2730278..2731633 [-], 1356	383758443	hypothetical protein
34	RGE_25910	2731767..2732033 [-], 267	383758444	hypothetical protein	PAAR
35	RGE_25920	2732065..2732925 [-], 861	383758445	peptidase M15C family protein
36	RGE_25930	2733140..2733901 [+], 762	383758446	hypothetical protein
37	RGE_25940	2733898..2736903 [+], 3006	383758447	hypothetical protein	TssI
38	RGE_25950	2736907..2738979 [+], 2073	383758448	hypothetical protein
39	RGE_25960	2739280..2740236 [+], 957	383758449	hypothetical protein
40	RGE_25970	2740322..2741380 [+], 1059	383758450	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

N/A