SecReT6
I. Summary
SecReT6 ID566 insolico
StrainRubrivivax gelatinosus IL144
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017075
Location3216399..3231086
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number011201111
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1RGE_302503211835..3212449 [-], 615383758878hypothetical protein 
2RGE_302603212707..3214533 [+], 1827383758879AMP-dependent synthetase and ligase 
3RGE_30270 (mcp)3214542..3216056 [-], 1515383758880methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
4RGE_302803216189..3216383 [+], 195383758881hypothetical protein 
5RGE_302903216399..3219158 [-], 2760383758882hypothetical protein  TssI
6RGE_303003219155..3219895 [-], 741383758883hypothetical protein  TssL
7RGE_303103219899..3221218 [-], 1320383758884hypothetical protein  TssK
8RGE_303203221226..3221798 [-], 573383758885hypothetical protein  TssJ
9RGE_303303221983..3222669 [+], 687383758886hypothetical protein 
10RGE_303403222693..3223208 [+], 516383758887hypothetical protein  TssB
11RGE_303503223213..3224685 [+], 1473383758888hypothetical protein  TssC
12RGE_303603224706..3225224 [+], 519383758889hypothetical protein  TssD
13RGE_303703225232..3225681 [+], 450383758890hypothetical protein  TssE
14RGE_303803225683..3227521 [+], 1839383758891hypothetical protein  TssF
15RGE_303903227527..3228522 [+], 996383758892hypothetical protein  TssG
16RGE_304003228519..3231086 [+], 2568383758893hypothetical protein  TssI
17RGE_304103231128..3231592 [-], 465383758894thioredoxin domain-containing protein 
18RGE_304203231612..3231923 [-], 312383758895hypothetical protein 
19RGE_304303231916..3233583 [-], 1668383758896pepSY-associated TM helix domain protein 
20RGE_304403233595..3233897 [-], 303383758897hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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