I. Summary

SecReT6 ID	567
Strain	Leptospirillum ferrooxidans C2-3
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017094
Location	2335440..2357828
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	LFE_2268	2331776..2332273 [-], 498	383785500	hypothetical protein
2	LFE_2269	2332755..2332955 [+], 201	383785501	hypothetical protein
3	LFE_2270	2333363..2334586 [-], 1224	383785502	transposase
4	LFE_2271	2334685..2334882 [+], 198	383785503	hypothetical protein
5	LFE_2272	2334879..2335010 [+], 132	383785504	hypothetical protein
6	LFE_2273	2335440..2335940 [+], 501	383785505	hypothetical protein	TssB
7	LFE_2274	2335978..2337471 [+], 1494	383785506	hypothetical protein	TssC
8	LFE_2275	2337511..2337999 [+], 489	383785507	hypothetical protein	TssD
9	LFE_2276	2338013..2338429 [+], 417	383785508	GPW/gp25 family protein	TssE
10	LFE_2277	2338520..2340253 [+], 1734	383785509	hypothetical protein	TssF
11	LFE_2278	2340217..2341251 [+], 1035	383785510	hypothetical protein	TssG
12	LFE_2279	2341248..2343908 [+], 2661	383785511	ATPase AAA2 domain protein	TssH
13	LFE_2280	2343914..2345416 [+], 1503	383785512	Rhs element Vgr protein	TssI
14	LFE_2281	2345496..2346218 [+], 723	383785513	hypothetical protein
15	LFE_2282	2346302..2349046 [+], 2745	383785514	pentapeptide repeat protein
16	LFE_2283	2349043..2350110 [+], 1068	383785515	pentapeptide repeat protein
17	LFE_2284	2350125..2350775 [+], 651	383785516	hypothetical protein
18	LFE_2285	2350795..2351190 [+], 396	383785517	hypothetical protein
19	LFE_2286	2351222..2351905 [+], 684	383785518	hypothetical protein	TssJ
20	LFE_2287	2351922..2353301 [+], 1380	383785519	hypothetical protein	TssK
21	LFE_2288	2353301..2353969 [+], 669	383785520	hypothetical protein	TssL
22	LFE_2289	2353986..2357828 [+], 3843	383785521	hypothetical protein	TssM
23	LFE_2290	2357874..2359418 [+], 1545	383785522	ImpA domain protein	TssA
24	LFE_2291	2359517..2359870 [+], 354	383785523	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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