I. Summary

SecReT6 ID	569
Strain	Yersinia pestis D106004
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017154
Location	916567..928312
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	0

7

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPD4_0710	913023..913445 [+], 423	384121302	CAAX amino terminal protease family protein
2	YPD4_0711	913896..914291 [+], 396	384121303	putative lipoprotein
3	YPD4_0712	916567..917067 [+], 501	384121304	hypothetical protein	TssB
4	YPD4_0713	917116..918654 [+], 1539	384121305	hypothetical protein	TssC
5	YPD4_0714	918771..920018 [+], 1248	384121306	hypothetical protein	TssK
6	YPD4_0715	920015..920701 [+], 687	384121307	hypothetical protein	TssL
7	YPD4_0716	920701..921813 [+], 1113	384121308	OmpA-family membrane protein
8	YPD4_0717	921810..922436 [+], 627	384121309	hypothetical protein	TagL
9	YPD4_0718	922440..922931 [+], 492	384121310	hypothetical protein	TssD
10	YPD4_0719	923319..925961 [+], 2643	384121311	putative ATPase subunit of ATP-dependent protease	TssH
11	YPD4_0720	925964..928312 [+], 2349	384121312	hypothetical protein	TssI
12	YPD4_0721	928328..930625 [+], 2298	384121313	hypothetical protein
13	YPD4_0722	930612..931379 [+], 768	384121314	hypothetical protein
14	YPD4_0723 (insB)	931816..932172 [+], 357	384121315	insertion sequence protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPD4_0718	922440..922931 [+], 492	384121310	hypothetical protein	EC042_4529

Download FASTA format files

Proteins        Genes

N/A

N/A