SecReT6
I. Summary
SecReT6 ID569 insolico
StrainYersinia pestis D106004
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017154
Location916567..928312
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD4_0710913023..913445 [+], 423384121302CAAX amino terminal protease family protein 
2YPD4_0711913896..914291 [+], 396384121303putative lipoprotein 
3YPD4_0712916567..917067 [+], 501384121304hypothetical protein  TssB
4YPD4_0713917116..918654 [+], 1539384121305hypothetical protein  TssC
5YPD4_0714918771..920018 [+], 1248384121306hypothetical protein  TssK
6YPD4_0715920015..920701 [+], 687384121307hypothetical protein  TssL
7YPD4_0716920701..921813 [+], 1113384121308OmpA-family membrane protein 
8YPD4_0717921810..922436 [+], 627384121309hypothetical protein  TagL
9YPD4_0718922440..922931 [+], 492384121310hypothetical protein  TssD
10YPD4_0719923319..925961 [+], 2643384121311putative ATPase subunit of ATP-dependent protease  TssH
11YPD4_0720925964..928312 [+], 2349384121312hypothetical protein  TssI
12YPD4_0721928328..930625 [+], 2298384121313hypothetical protein 
13YPD4_0722930612..931379 [+], 768384121314hypothetical protein 
14YPD4_0723 (insB)931816..932172 [+], 357384121315insertion sequence protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD4_0718922440..922931 [+], 492384121310hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A