SecReT6
I. Summary
SecReT6 ID57 insolico
StrainYersinia pestis biovar Microtus str. 91001
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_005810
Location3054348..3073862
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010001100
ComponentTssGTssJTssKTssM
Number0110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YP_2749 (ndk)3050457..3050885 [-], 42945442521nucleoside diphosphate kinase 
2YP_27503051212..3053632 [-], 242145442522hypothetical protein 
3YP_27513053807..3054064 [+], 25845442523hypothetical protein 
4YP_2752 (yapA)3054348..3058832 [+], 448545442524autotransporter protein 
5YP_27543060117..3061325 [-], 120945442525transposase for the IS285 insertion element 
6YP_2756 (fimA5)3062525..3063133 [+], 60945442526fimbrial protein 
7YP_27573063217..3063762 [+], 54645442527hypothetical protein  TssB
8YP_27583063765..3065288 [+], 152445442528hypothetical protein  TssC
9YP_27593065530..3066099 [+], 57045442529hypothetical protein  TssD
10YP_27603066313..3066912 [+], 60045442530hypothetical protein  TssJ
11YP_27613066916..3068265 [+], 135045442531hypothetical protein  TssK
12YP_27633068944..3069966 [+], 102345442532transposase for insertion sequence IS100 
13YP_2764 (dnaC_21)3069963..3070745 [+], 78345442533transposase/IS protein 
14YP_2766 (fUI1)3071341..3072852 [+], 151245442534permease 
15YP_2767 (dnaQ)3073098..3073862 [-], 76545442535DNA polymerase III subunit epsilon 
16YP_2768 (rnhA)3073932..3074396 [+], 46545442536ribonuclease H 
17YP_2769 (smtA8)3074451..3075170 [-], 72045442537hypothetical protein 
18YP_2770 (gloB3)3075128..3075970 [+], 84345442538hydroxyacylglutathione hydrolase 
19YP_2771 (mltD)3076003..3077430 [+], 1428229220778membrane-bound lytic murein transglycosylase D 
20YP_27723077473..3078255 [-], 78345442540hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741 , ECA2866

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YP_27593065530..3066099 [+], 57045442529hypothetical protein ROD_27741
2YP_3069(hcp7)3402632..3403150 [+], 51945442824hypothetical protein ECA2866

Download FASTA format files
Proteins        Genes
N/A
(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
 
in_silico This literature contains bioinformatics investigation