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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YP_2749 (ndk) | 3050457..3050885 [-], 429 | 45442521 | nucleoside diphosphate kinase | |
2 | YP_2750 | 3051212..3053632 [-], 2421 | 45442522 | hypothetical protein | |
3 | YP_2751 | 3053807..3054064 [+], 258 | 45442523 | hypothetical protein | |
4 | YP_2752 (yapA) | 3054348..3058832 [+], 4485 | 45442524 | autotransporter protein | |
5 | YP_2754 | 3060117..3061325 [-], 1209 | 45442525 | transposase for the IS285 insertion element | |
6 | YP_2756 (fimA5) | 3062525..3063133 [+], 609 | 45442526 | fimbrial protein | |
7 | YP_2757 | 3063217..3063762 [+], 546 | 45442527 | hypothetical protein | TssB |
8 | YP_2758 | 3063765..3065288 [+], 1524 | 45442528 | hypothetical protein | TssC |
9 | YP_2759 | 3065530..3066099 [+], 570 | 45442529 | hypothetical protein | TssD |
10 | YP_2760 | 3066313..3066912 [+], 600 | 45442530 | hypothetical protein | TssJ |
11 | YP_2761 | 3066916..3068265 [+], 1350 | 45442531 | hypothetical protein | TssK |
12 | YP_2763 | 3068944..3069966 [+], 1023 | 45442532 | transposase for insertion sequence IS100 | |
13 | YP_2764 (dnaC_21) | 3069963..3070745 [+], 783 | 45442533 | transposase/IS protein | |
14 | YP_2766 (fUI1) | 3071341..3072852 [+], 1512 | 45442534 | permease | |
15 | YP_2767 (dnaQ) | 3073098..3073862 [-], 765 | 45442535 | DNA polymerase III subunit epsilon | |
16 | YP_2768 (rnhA) | 3073932..3074396 [+], 465 | 45442536 | ribonuclease H | |
17 | YP_2769 (smtA8) | 3074451..3075170 [-], 720 | 45442537 | hypothetical protein | |
18 | YP_2770 (gloB3) | 3075128..3075970 [+], 843 | 45442538 | hydroxyacylglutathione hydrolase | |
19 | YP_2771 (mltD) | 3076003..3077430 [+], 1428 | 229220778 | membrane-bound lytic murein transglycosylase D | |
20 | YP_2772 | 3077473..3078255 [-], 783 | 45442540 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein