I. Summary
SecReT6 ID570 insolico
StrainYersinia pestis D106004
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD4_12961663685..1664437 [+], 753384121887enoyl-CoA hydratase 
2YPD4_12971664440..1665228 [+], 789384121888putative short chain dehydrogenase 
3YPD4_12981665423..1665755 [+], 333384121889hypothetical protein 
4YPD4_12991666140..1666988 [+], 849384121890putative acyl transferase 
5YPD4_13001667977..1668477 [+], 501384121891hypothetical protein  TssB
6YPD4_13011668526..1670070 [+], 1545384121892hypothetical protein  TssC
7YPD4_13021670187..1671434 [+], 1248384121893hypothetical protein  TssK
8YPD4_13031671431..1672117 [+], 687384121894hypothetical protein  TssL
9YPD4_13041672117..1673853 [+], 1737384121895putative OmpA-family membrane protein  TagL
10YPD4_13051673857..1674348 [+], 492384121896hypothetical protein  TssD
11YPD4_1306 (clpB3)1674766..1677414 [+], 2649384121897Clp ATPase  TssH
12YPD4_1307 (vgrG1)1677411..1679759 [+], 2349384121898hypothetical protein  TssI
13YPD4_13081679774..1681996 [+], 2223384121899hypothetical protein 
14YPD4_13091684109..1684744 [+], 636384121900hypothetical protein 
15YPD4_13101684760..1687060 [+], 2301384121901putative kinase 
16YPD4_13111687057..1687830 [+], 774384121902hypothetical protein 
17YPD4_13121688260..1690443 [+], 2184384121903hypothetical protein 
18YPD4_13131691819..1692139 [-], 321384121904transposase 
19YPD4_13141693251..1694483 [+], 1233384121905hypothetical protein 
20YPD4_13151694480..1697902 [+], 3423384121906hypothetical protein  TssM
21YPD4_13161697946..1699547 [+], 1602384121907hypothetical protein  TssA
22YPD4_13171699565..1700623 [+], 1059384121908hypothetical protein  PAAR
23YPD4_13181700638..1701093 [+], 456384121909hypothetical protein 
24YPD4_13191701314..1703077 [+], 1764384121910hypothetical protein  TssF
25YPD4_13201703041..1704126 [+], 1086384121911hypothetical protein  TssG
26YPD4_13211704101..1704682 [+], 582384121912hypothetical protein  TssJ
27YPD4_13221704682..1705134 [+], 453384121913hypothetical protein  TssE
28YPD4_13231705159..1706526 [+], 1368384121914hypothetical protein  TssA
29YPD4_13241706738..1707361 [-], 624384121915hypothetical protein 
30YPD4_13251708068..1709639 [+], 1572384121916ABC transporter ATP-binding protein 
31YPD4_13261709867..1710520 [+], 654384121917hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD4_13051673857..1674348 [+], 492384121896hypothetical protein EC042_4529

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Proteins        Genes