I. Summary
SecReT6 ID572 insolico
StrainYersinia pestis D106004
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD4_3068 (nlpI)3888218..3889102 [-], 885384123655lipoprotein NlpI 
2YPD4_3069 (pnp)3889227..3891221 [-], 1995384123656polyribonucleotide nucleotidyltransferase 
3YPD4_30703891611..3892396 [-], 786384123657IS1661 transposase 
4YPD4_30713892450..3892965 [-], 516384123658insertion element DNA-binding protein 
5YPD4_30723893115..3893759 [+], 645384123659hypothetical protein  TssF
6YPD4_30733893723..3894811 [+], 1089384123660hypothetical protein  TssG
7YPD4_30743894937..3896253 [+], 1317384123661hypothetical protein  Fha
8YPD4_30753896253..3896798 [+], 546384123662putative lipoprotein  TssJ
9YPD4_30763896801..3898147 [+], 1347384123663hypothetical protein  TssK
10YPD4_30773898147..3898914 [+], 768384123664hypothetical protein  TssL
11YPD4_3078 (clpB2)3898925..3901528 [+], 2604384123665Clp ATPase  TssH
12YPD4_30793901525..3902322 [+], 798384123666hypothetical protein 
13YPD4_30803902319..3903005 [+], 687384123667hypothetical protein 
14YPD4_30813903011..3904399 [+], 1389384123668hypothetical protein  TssA
15YPD4_30823904431..3907964 [+], 3534384123669hypothetical protein  TssM
16YPD4_30833908089..3908871 [+], 783384123670hypothetical protein  TssA
17YPD4_30843908868..3909401 [+], 534384123671hypothetical protein 
18YPD4_30853909423..3911825 [+], 2403384123672putative Rhs accessory genetic element  TssI
19YPD4_30863911831..3912289 [+], 459384123673hypothetical protein 
20YPD4_30873912282..3915146 [+], 2865384123674hypothetical protein  PAAR
21YPD4_30883915174..3916544 [+], 1371384123675hypothetical protein 
22YPD4_30893916546..3917031 [+], 486384123676hypothetical protein 
23YPD4_30903917654..3918061 [-], 408384123677transcriptional regulator 
24YPD4_3091 (vgrG6)3918422..3920620 [+], 2199384123678putative Rhs accessory genetic element  TssI
25YPD4_30923920674..3921045 [+], 372384123679hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.