SecReT6
I. Summary
SecReT6 ID574 insolico
StrainYersinia pestis D182038
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017160
Location918676..930422
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD8_0710915132..915554 [+], 423384125179CAAX amino terminal protease family protein 
2YPD8_0711918676..919176 [+], 501384125180hypothetical protein  TssB
3YPD8_0712919225..920763 [+], 1539384125181hypothetical protein  TssC
4YPD8_0713920880..922127 [+], 1248384125182hypothetical protein  TssK
5YPD8_0714922124..922810 [+], 687384125183hypothetical protein  TssL
6YPD8_0715922810..924546 [+], 1737384125184hypothetical protein  TagL
7YPD8_0716924550..925041 [+], 492384125185hypothetical protein  TssD
8YPD8_0717925429..928077 [+], 2649384125186heat shock protein  TssH
9YPD8_0718928074..930422 [+], 2349384125187hypothetical protein  TssI
10YPD8_0719930732..932660 [+], 1929384125188hypothetical protein 
11YPD8_0720934753..935388 [+], 636384125189hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD8_0716924550..925041 [+], 492384125185hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A