I. Summary

SecReT6 ID	574
Strain	Yersinia pestis D182038
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017160
Location	918676..930422
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPD8_0710	915132..915554 [+], 423	384125179	CAAX amino terminal protease family protein
2	YPD8_0711	918676..919176 [+], 501	384125180	hypothetical protein	TssB
3	YPD8_0712	919225..920763 [+], 1539	384125181	hypothetical protein	TssC
4	YPD8_0713	920880..922127 [+], 1248	384125182	hypothetical protein	TssK
5	YPD8_0714	922124..922810 [+], 687	384125183	hypothetical protein	TssL
6	YPD8_0715	922810..924546 [+], 1737	384125184	hypothetical protein	TagL
7	YPD8_0716	924550..925041 [+], 492	384125185	hypothetical protein	TssD
8	YPD8_0717	925429..928077 [+], 2649	384125186	heat shock protein	TssH
9	YPD8_0718	928074..930422 [+], 2349	384125187	hypothetical protein	TssI
10	YPD8_0719	930732..932660 [+], 1929	384125188	hypothetical protein
11	YPD8_0720	934753..935388 [+], 636	384125189	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPD8_0716	924550..925041 [+], 492	384125185	hypothetical protein	EC042_4529

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Proteins        Genes

N/A

N/A