I. Summary
SecReT6 ID575 insolico
StrainYersinia pestis D182038
Repliconchromosome [Browse all T6SS(s) in this replicon]
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPD8_12821644180..1644932 [+], 753384125746enoyl-CoA hydratase 
2YPD8_12831644935..1645723 [+], 789384125747putative short chain dehydrogenase 
3YPD8_12841645918..1646250 [+], 333384125748hypothetical protein 
4YPD8_12851646635..1647483 [+], 849384125749putative acyl transferase 
5YPD8_12861648472..1648972 [+], 501384125750hypothetical protein  TssB
6YPD8_12871649021..1650565 [+], 1545384125751hypothetical protein  TssC
7YPD8_12881650682..1651929 [+], 1248384125752hypothetical protein  TssK
8YPD8_12891651926..1652534 [+], 609384125753membrane protein  TssL
9YPD8_12901652611..1654347 [+], 1737384125754putative OmpA-family membrane protein  TagL
10YPD8_12911654351..1654842 [+], 492384125755hypothetical protein  TssD
11YPD8_1292 (clpA2)1655260..1656783 [+], 1524384125756putative ATPase subunit of ATP-dependent protease  TssH
12YPD8_12931656780..1657904 [+], 1125384125757Clp ATPase  TssH
13YPD8_12941657907..1660255 [+], 2349384125758hypothetical protein  TssI
14YPD8_12951660271..1662568 [+], 2298384125759hypothetical protein 
15YPD8_12961662555..1663322 [+], 768384125760hypothetical protein 
16YPD8_1297 (insB)1663759..1664115 [+], 357384125761insertion sequence protein 
17YPD8_12981664723..1665358 [+], 636384125762hypothetical protein 
18YPD8_12991665374..1667674 [+], 2301384125763putative kinase 
19YPD8_13001667671..1668444 [+], 774384125764hypothetical protein 
20YPD8_13011668874..1671057 [+], 2184384125765hypothetical protein 
21YPD8_13021672433..1672753 [-], 321384125766transposase 
22YPD8_13031673865..1675097 [+], 1233384125767hypothetical protein 
23YPD8_13041675094..1678516 [+], 3423384125768hypothetical protein  TssM
24YPD8_13051678560..1680161 [+], 1602384125769hypothetical protein  TssA
25YPD8_13061680179..1681237 [+], 1059384125770hypothetical protein  PAAR
26YPD8_13071681252..1681707 [+], 456384125771hypothetical protein 
27YPD8_13081681928..1683691 [+], 1764384125772hypothetical protein  TssF
28YPD8_13091683655..1684740 [+], 1086384125773hypothetical protein  TssG
29YPD8_13101684715..1685296 [+], 582384125774hypothetical protein  TssJ
30YPD8_13111685296..1685748 [+], 453384125775hypothetical protein  TssE
31YPD8_13121685773..1687140 [+], 1368384125776hypothetical protein  TssA
32YPD8_13131687352..1687975 [-], 624384125777hypothetical protein 
33YPD8_13141688682..1690253 [+], 1572384125778ABC transporter ATP-binding protein 
34YPD8_13151690481..1691134 [+], 654384125779hypothetical protein 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Homology Effector list

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPD8_12911654351..1654842 [+], 492384125755hypothetical protein EC042_4529

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Proteins        Genes