SecReT6
I. Summary
SecReT6 ID578 insolico
StrainAcinetobacter baumannii 1656-2
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017162
Location1848414..1868857
Comment
FunctionN/A
T6SS TypeType i; subtype i4b
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011111
ComponentTssGTssJTssKTssM
Number1012
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1ABK1_RS089751844294..1845175 [-], 882446922833ABC transporter ATP-binding protein 
2ABK1_RS089801845175..1846119 [-], 945446464671ABC transporter permease 
3ABK1_RS089851846215..1846616 [-], 402445992937hypothetical protein 
4ABK1_RS089901847705..1848397 [+], 693446792453hypothetical protein 
5ABK1_RS08995 (tssB)1848414..1848917 [+], 504447041786type VI secretion system contractile sheath small subunit  TssB
6ABK1_RS09000 (tssC)1848910..1850391 [+], 1482446989267type VI secretion system contractile sheath large subunit  TssC
7ABK1_RS090051850441..1850944 [+], 504446575849type VI secretion system tube protein Hcp  TssD
8ABK1_RS09010 (tssE)1851024..1851500 [+], 477446969775type VI secretion system baseplate subunit TssE  TssE
9ABK1_RS09015 (tssF)1851517..1853328 [+], 1812446490978type VI secretion system baseplate subunit TssF  TssF
10ABK1_RS09020 (tssG)1853292..1854290 [+], 999447113139type VI secretion system baseplate subunit TssG  TssG
11ABK1_RS090251854287..1855699 [+], 1413446514536hypothetical protein 
12ABK1_RS09030 (tssM)1855730..1857853 [+], 2124pseudogenetype VI secretion system membrane subunit TssM 
13ABK1_RS090351857894..1858823 [+], 930447013895IS5-like element ISAba10 family transposase 
14ABK1_RS090401858874..1860586 [+], 1713pseudogenetype VI secretion system membrane subunit TssM 
15ABK1_RS09045 (tagF)1860624..1861583 [+], 960446479387type VI secretion system-associated protein TagF 
16ABK1_RS090501861586..1862353 [+], 768446995154OmpA family protein 
17ABK1_RS090551862370..1862633 [+], 264446090257PAAR domain-containing protein 
18ABK1_RS09060 (tssH)1862853..1865534 [+], 2682487927950type VI secretion system ATPase TssH  TssH
19ABK1_RS09065 (tssA)1865558..1866652 [+], 1095445942858type VI secretion system protein TssA  TssA
20ABK1_RS09070 (tssK)1866669..1868033 [+], 1365446393590type VI secretion system baseplate subunit TssK  TssK
21ABK1_RS090751868051..1868857 [+], 807446005770type IVB secretion system protein IcmH/DotU  TssL
22ABK1_RS090801868870..1869472 [+], 603445968596hypothetical protein 
23ABK1_RS090851869480..1870433 [+], 954446895327M15 family metallopeptidase 
24ABK1_RS090901870436..1871287 [-], 852446382329LysR family transcriptional regulator 
25ABK1_RS090951871460..1872107 [+], 6481190339449ankyrin repeat domain-containing protein 
26ABK1_RS091001872123..1872605 [+], 483446569383nucleoside deaminase 
27ABK1_RS091051872605..1873783 [+], 1179446736559cyanate transporter 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
A1S_1296

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog

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Proteins        Genes
N/A
N/A