SecReT6
I. Summary
SecReT6 ID579 insolico
StrainYersinia pestis A1122
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017168
Location18863..30639
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A1122_0006515091..15741 [+], 651384137020hypothetical protein 
2A1122_0007016192..16587 [+], 396384137021putative lipoprotein 
3A1122_0007516649..16918 [+], 270384137022insertion element protein 
4A1122_0008017092..17463 [+], 372384137023hypothetical protein 
5A1122_0008517506..17661 [+], 156384137024hypothetical protein 
6A1122_0009018863..19363 [+], 501384137025hypothetical protein  TssB
7A1122_0009519412..20950 [+], 1539384137026hypothetical protein  TssC
8A1122_0010020962..22314 [+], 1353384137027hypothetical protein  TssK
9A1122_0010522311..22997 [+], 687384137028hypothetical protein  TssL
10A1122_0011022997..24733 [+], 1737384137029OmpA/MotB domain-containing protein  TagL
11A1122_0011524737..25228 [+], 492384137030hypothetical protein  TssD
12A1122_0012025646..28294 [+], 2649384137031Clp ATPase  TssH
13A1122_0012528291..30639 [+], 2349384137032hypothetical protein  TssI
14A1122_0013030654..32876 [+], 2223384137033hypothetical protein 
15A1122_0014533531..33725 [+], 195384137034hypothetical protein 
16A1122_0015033754..34029 [+], 276384137035insertion sequence protein 
17A1122_0016034950..35585 [+], 636384137036hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A1122_0011524737..25228 [+], 492384137030hypothetical protein EC042_4529

Download FASTA format files
Proteins        Genes
N/A
N/A