 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YP_3452 | 3923357..3924190 [-], 834 | 45443195 | hypothetical protein | |
2 | YP_3453 (dAP2) | 3924567..3925943 [-], 1377 | 45443196 | hypothetical protein | |
3 | YP_3454 (yspR) | 3926511..3927254 [+], 744 | 45443197 | quorum-sensing transcriptional regulator | |
4 | YP_3455 (yspI) | 3927235..3927885 [-], 651 | 45443198 | N-acylhomoserine lactone synthase | |
5 | YP_3456 | 3929055..3929705 [+], 651 | 45443199 | hypothetical protein | |
6 | YP_3457 | 3930156..3930551 [+], 396 | 45443200 | lipoprotein | |
7 | YP_3458 (insA1) | 3930613..3930882 [+], 270 | 45443201 | insertion element protein | |
8 | YP_3460 | 3931056..3931427 [+], 372 | 45443202 | hypothetical protein | |
9 | YP_3461 | 3932824..3933327 [+], 504 | 45443203 | hypothetical protein | TssB |
10 | YP_3462 | 3933370..3934920 [+], 1551 | 45443204 | hypothetical protein | TssC |
11 | YP_3463 | 3934932..3936284 [+], 1353 | 45443205 | hypothetical protein | TssK |
12 | YP_3464 | 3936281..3936967 [+], 687 | 45443206 | hypothetical protein | TssL |
13 | YP_3465 (ompA4) | 3936967..3938703 [+], 1737 | 45443207 | OmpA family membrane protein | TagL |
14 | YP_3466 (hcp8) | 3938707..3939198 [+], 492 | 45443208 | hemolysin-coregulated protein | TssD |
15 | YP_3467 (clpB3) | 3939616..3942264 [+], 2649 | 45443209 | Clp ATPase | TssH |
16 | YP_3468 (vgrG4) | 3942261..3944609 [+], 2349 | 45443210 | hypothetical protein | TssI |
17 | YP_3469 | 3944624..3946846 [+], 2223 | 45443211 | hypothetical protein | |
18 | YP_3470 | 3946847..3947347 [+], 501 | 45443212 | hypothetical protein | |
19 | YP_3471 | 3947531..3947725 [+], 195 | 45443213 | hypothetical protein | |
20 | YP_3472 | 3947751..3948029 [+], 279 | 45443214 | insertion sequence protein | |
21 | YP_3474 (mdlB7) | 3948950..3949585 [+], 636 | 45443215 | ABC-type multidrug/protein/lipid transport system, ATPase | |
22 | YP_3475 | 3949601..3951898 [+], 2298 | 45443216 | kinase | |
23 | YP_3476 | 3951885..3952652 [+], 768 | 45443217 | hypothetical protein | |
24 | YP_3477 (insA2) | 3952745..3953023 [+], 279 | 45443218 | insertion sequence protein | |
25 | YP_3478 (insB) | 3953077..3953445 [+], 369 | 45443219 | insertion sequence protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein