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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | A1122_11190 | 2456588..2457682 [+], 1095 | 384139196 | murein hydrolase B | |
2 | A1122_11195 | 2457891..2458031 [+], 141 | 384139197 | hypothetical protein | |
3 | A1122_11200 | 2458937..2459539 [+], 603 | 384139198 | putative luxR-family regulatory protein | |
4 | A1122_11205 | 2459897..2460379 [-], 483 | 384139199 | hypothetical protein | |
5 | A1122_11210 | 2460376..2462058 [-], 1683 | 384139200 | hypothetical protein | TagL |
6 | A1122_11215 | 2462059..2462742 [-], 684 | 384139201 | hypothetical protein | |
7 | A1122_11220 | 2462739..2464076 [-], 1338 | 384139202 | hypothetical protein | |
8 | A1122_11225 | 2464116..2465147 [-], 1032 | 384139203 | putative fimbrial protein | |
9 | A1122_11230 | 2465154..2466335 [-], 1182 | 384139204 | hypothetical protein | TssA |
10 | A1122_11235 | 2466434..2467459 [-], 1026 | 384139205 | hypothetical protein | TssG |
11 | A1122_11240 | 2467459..2469339 [-], 1881 | 384139206 | type VI secretion protein | TssF |
12 | A1122_11245 | 2470122..2472797 [+], 2676 | 384139207 | Clp ATPase | TssH |
13 | A1122_11250 | 2472998..2473543 [+], 546 | 384139208 | frimbrial protein | |
14 | A1122_11255 | 2473700..2474461 [+], 762 | 384139209 | putative pili chaperone protein | |
15 | A1122_11260 | 2474589..2476139 [+], 1551 | 384139210 | hypothetical protein | |
16 | A1122_11265 | 2476161..2477369 [-], 1209 | 384139211 | transposase for the IS285 insertion element | |
17 | A1122_11270 | 2477427..2478584 [+], 1158 | 384139212 | outer membrane usher protein | |
18 | A1122_11275 | 2478569..2479177 [+], 609 | 384139213 | fimbrial protein | |
19 | A1122_11280 | 2479282..2479806 [+], 525 | 384139214 | hypothetical protein | TssB |
20 | A1122_11285 | 2479830..2481332 [+], 1503 | 384139215 | hypothetical protein | TssC |
21 | A1122_11290 | 2481658..2482143 [+], 486 | 384139216 | Hcp1 family type VI secretion system effector | TssD |
22 | A1122_11295 | 2482396..2482956 [+], 561 | 384139217 | hypothetical protein | TssJ |
23 | A1122_11300 | 2482960..2484309 [+], 1350 | 384139218 | hypothetical protein | TssK |
24 | A1122_11305 | 2484306..2484974 [+], 669 | 384139219 | hypothetical protein | TssL |
25 | A1122_11310 | 2484988..2486010 [+], 1023 | 384139220 | transposase for insertion sequence | |
26 | A1122_11315 | 2486007..2486789 [+], 783 | 384139221 | transposase/IS protein | |
27 | A1122_11320 | 2487156..2487461 [-], 306 | 384139222 | hypothetical protein | |
28 | A1122_11325 | 2487558..2487959 [-], 402 | 384139223 | hypothetical protein | |
29 | A1122_11330 | 2487941..2489260 [-], 1320 | 384139224 | putative dual specificity phosphatase | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein