SecReT6
I. Summary
SecReT6 ID582 insolico
StrainYersinia pestis A1122
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017168
Location2460376..2484974
Comment
FunctionN/A
T6SS TypeType i; subtype i3
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111011101
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1A1122_111902456588..2457682 [+], 1095384139196murein hydrolase B 
2A1122_111952457891..2458031 [+], 141384139197hypothetical protein 
3A1122_112002458937..2459539 [+], 603384139198putative luxR-family regulatory protein 
4A1122_112052459897..2460379 [-], 483384139199hypothetical protein 
5A1122_112102460376..2462058 [-], 1683384139200hypothetical protein  TagL
6A1122_112152462059..2462742 [-], 684384139201hypothetical protein 
7A1122_112202462739..2464076 [-], 1338384139202hypothetical protein 
8A1122_112252464116..2465147 [-], 1032384139203putative fimbrial protein 
9A1122_112302465154..2466335 [-], 1182384139204hypothetical protein  TssA
10A1122_112352466434..2467459 [-], 1026384139205hypothetical protein  TssG
11A1122_112402467459..2469339 [-], 1881384139206type VI secretion protein  TssF
12A1122_112452470122..2472797 [+], 2676384139207Clp ATPase  TssH
13A1122_112502472998..2473543 [+], 546384139208frimbrial protein 
14A1122_112552473700..2474461 [+], 762384139209putative pili chaperone protein 
15A1122_112602474589..2476139 [+], 1551384139210hypothetical protein 
16A1122_112652476161..2477369 [-], 1209384139211transposase for the IS285 insertion element 
17A1122_112702477427..2478584 [+], 1158384139212outer membrane usher protein 
18A1122_112752478569..2479177 [+], 609384139213fimbrial protein 
19A1122_112802479282..2479806 [+], 525384139214hypothetical protein  TssB
20A1122_112852479830..2481332 [+], 1503384139215hypothetical protein  TssC
21A1122_112902481658..2482143 [+], 486384139216Hcp1 family type VI secretion system effector  TssD
22A1122_112952482396..2482956 [+], 561384139217hypothetical protein  TssJ
23A1122_113002482960..2484309 [+], 1350384139218hypothetical protein  TssK
24A1122_113052484306..2484974 [+], 669384139219hypothetical protein  TssL
25A1122_113102484988..2486010 [+], 1023384139220transposase for insertion sequence 
26A1122_113152486007..2486789 [+], 783384139221transposase/IS protein 
27A1122_113202487156..2487461 [-], 306384139222hypothetical protein 
28A1122_113252487558..2487959 [-], 402384139223hypothetical protein 
29A1122_113302487941..2489260 [-], 1320384139224putative dual specificity phosphatase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ROD_27741

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1A1122_112902481658..2482143 [+], 486384139216Hcp1 family type VI secretion system effector ROD_27741

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Proteins        Genes
N/A
N/A

Genomics & Bioinformatics Group in MML, SJTU