SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	584
Strain	Yersinia pestis A1122
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017168
Location	3969143..4002677
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	A1122_18455	3965149..3965802 [-], 654	384140626	hypothetical protein
2	A1122_18460	3966030..3967625 [-], 1596	384140627	ABC transporter ATP-binding protein
3	A1122_18465	3968308..3968931 [+], 624	384140628	hypothetical protein
4	A1122_18470	3969143..3970510 [-], 1368	384140629	hypothetical protein	TssA
5	A1122_18475	3970535..3970987 [-], 453	384140630	hypothetical protein	TssE
6	A1122_18480	3970987..3971568 [-], 582	384140631	hypothetical protein	TssJ
7	A1122_18485	3971543..3972628 [-], 1086	384140632	hypothetical protein	TssG
8	A1122_18490	3972592..3974355 [-], 1764	384140633	type VI secretion protein	TssF
9	A1122_18495	3974576..3975046 [-], 471	384140634	hypothetical protein
10	A1122_18500	3975046..3976104 [-], 1059	384140635	hypothetical protein	PAAR
11	A1122_18505	3976122..3977723 [-], 1602	384140636	hypothetical protein	TssA
12	A1122_18510	3977767..3981189 [-], 3423	384140637	hypothetical protein	TssM
13	A1122_18515	3981186..3982418 [-], 1233	384140638	hypothetical protein
14	A1122_18520	3983139..3983258 [-], 120	384140639	hypothetical protein
15	A1122_18525	3983530..3983850 [+], 321	384140640	transposase
16	A1122_18530	3984364..3984531 [-], 168	384140641	hypothetical protein
17	A1122_18535	3984583..3985053 [-], 471	384140642	hypothetical protein
18	A1122_18540	3985130..3985231 [+], 102	384140643	hypothetical protein
19	A1122_18545	3985226..3987409 [-], 2184	384140644	hypothetical protein
20	A1122_18550	3987425..3987685 [-], 261	384140645	hypothetical protein
21	A1122_18555	3987839..3988612 [-], 774	384140646	hypothetical protein
22	A1122_18560	3988609..3990909 [-], 2301	384140647	hypothetical protein
23	A1122_18565	3990925..3993273 [-], 2349	384140648	hypothetical protein	TssI
24	A1122_18570	3993276..3995918 [-], 2643	384140649	putative ATPase subunit of ATP-dependent protease	TssH
25	A1122_18575	3996306..3996797 [-], 492	384140650	hypothetical protein	TssD
26	A1122_18580	3996801..3998537 [-], 1737	384140651	hypothetical protein	TagL
27	A1122_18585	3998537..3999223 [-], 687	384140652	hypothetical protein	TssL
28	A1122_18590	3999220..4000572 [-], 1353	384140653	hypothetical protein	TssK
29	A1122_18595	4000584..4002128 [-], 1545	384140654	hypothetical protein	TssC
30	A1122_18600	4002177..4002677 [-], 501	384140655	hypothetical protein	TssB
31	A1122_18605	4003666..4004514 [-], 849	384140656	putative acyl transferase
32	A1122_18610	4004613..4004861 [-], 249	384140657	putative acyl carrier protein
33	A1122_18615	4004899..4005387 [-], 489	384140658	hypothetical protein
34	A1122_18620	4005426..4006214 [-], 789	384140659	putative short chain dehydrogenase
35	A1122_18625	4006217..4006969 [-], 753	384140660	polyketide biosynthesis enoyl-CoA hydratase

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	A1122_18575	3996306..3996797 [-], 492	384140650	hypothetical protein	EC042_4529

Download FASTA format files

Proteins Genes

N/A