SecReT6
I. Summary
SecReT6 ID588 insolico
StrainYersinia pestis biovar Medievalis str. Harbin 35
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017265
Location50171..56891
Comment
FunctionN/A
T6SS TypeType i; subtype i1
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number010001112
ComponentTssGTssJTssKTssM
Number0000
6
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPC_003845427..45663 [+], 237384412736hypothetical protein 
2YPC_0039 (malK)45667..46776 [+], 1110384412737maltose/maltodextrin transport ATP-binding protein 
3YPC_0040 (lamB)46847..48118 [+], 1272384412738maltoporin 
4YPC_0041 (malM)48359..49270 [+], 912384412739maltose operon periplasmic protein 
5YPC_004249507..49665 [-], 159384412740hypothetical protein 
6YPC_004349609..50019 [+], 411384412741hypothetical protein 
7YPC_004450171..50689 [-], 519384412742hypothetical protein  TssD
8YPC_004551213..51710 [+], 498384412743hypothetical protein  TssB
9YPC_004651778..53259 [+], 1482384412744hypothetical protein  TssC
10YPC_004753266..53706 [+], 441384412745hypothetical protein  TssE
11YPC_004853706..54224 [+], 519384412746Protein ImpG/VasA  TssF
12YPC_004954238..55260 [+], 1023384412747transposase 
13YPC_005055257..56039 [+], 783384412748transposase 
14YPC_005156055..56891 [+], 837384412749Protein ImpG/VasA  TssF
15YPC_005256781..57566 [-], 786384412750transposase for insertion sequence IS1661 
16YPC_005357620..58264 [-], 645384412751insertion element IS1661 DNA-binding protein 
17YPC_0054 (glpR)58328..59086 [-], 759384412752DNA-binding transcriptional repressor 
18YPC_0055 (glpG)59121..59957 [-], 837384412753intramembrane serine protease GlpG 
19YPC_0056 (glpE)59975..60304 [-], 330384412754thiosulfate sulfurtransferase 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
ABG57132

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPC_004450171..50689 [-], 519384412742hypothetical protein ABG57132

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Proteins        Genes
N/A
N/A