SecReT6
I. Summary
SecReT6 ID589 insolico
StrainYersinia pestis biovar Medievalis str. Harbin 35
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017265
Location822831..834607
Comment
FunctionN/A
T6SS TypeType i; subtype i2
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number111101100
ComponentTssGTssJTssKTssM
Number0010
7
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YPC_0812819059..819709 [+], 651384413429hypothetical protein 
2YPC_0813819834..819959 [-], 126384413430hypothetical protein 
3YPC_0814820160..820555 [+], 396384413431putative lipoprotein 
4YPC_0815820623..820886 [+], 264384413432insertion element protein 
5YPC_0816821060..821431 [+], 372384413433hypothetical protein 
6YPC_0817821447..821575 [-], 129384413434hypothetical protein 
7YPC_0818822831..823331 [+], 501384413435hypothetical protein  TssB
8YPC_0819823374..824918 [+], 1545384413436hypothetical protein  TssC
9YPC_0820824930..826282 [+], 1353384413437hypothetical protein  TssK
10YPC_0821826279..826965 [+], 687384413438hypothetical protein  TssL
11YPC_0822826965..828701 [+], 1737384413439putative OmpA-family membrane protein  TagL
12YPC_0823828705..829196 [+], 492384413440hypothetical protein  TssD
13YPC_0824829614..832262 [+], 2649384413441Clp ATPase  TssH
14YPC_0825832259..834607 [+], 2349384413442hypothetical protein  TssI
15YPC_0826834622..836844 [+], 2223384413443hypothetical protein 
16YPC_0827836955..837344 [+], 390384413444hypothetical protein 
17YPC_0828837771..838046 [+], 276384413445insertion sequence protein 
18YPC_0829838100..838435 [+], 336384413446Insertion sequence protein 
19YPC_0830838967..839602 [+], 636384413447hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 







Homology Effector list
EC042_4529

Effector identified
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProduct  Homolog
1YPC_0823828705..829196 [+], 492384413440hypothetical protein EC042_4529

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Proteins        Genes
N/A
N/A