I. Summary

SecReT6 ID	589
Strain	Yersinia pestis biovar Medievalis str. Harbin 35
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017265
Location	822831..834607
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	0	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	YPC_0812	819059..819709 [+], 651	384413429	hypothetical protein
2	YPC_0813	819834..819959 [-], 126	384413430	hypothetical protein
3	YPC_0814	820160..820555 [+], 396	384413431	putative lipoprotein
4	YPC_0815	820623..820886 [+], 264	384413432	insertion element protein
5	YPC_0816	821060..821431 [+], 372	384413433	hypothetical protein
6	YPC_0817	821447..821575 [-], 129	384413434	hypothetical protein
7	YPC_0818	822831..823331 [+], 501	384413435	hypothetical protein	TssB
8	YPC_0819	823374..824918 [+], 1545	384413436	hypothetical protein	TssC
9	YPC_0820	824930..826282 [+], 1353	384413437	hypothetical protein	TssK
10	YPC_0821	826279..826965 [+], 687	384413438	hypothetical protein	TssL
11	YPC_0822	826965..828701 [+], 1737	384413439	putative OmpA-family membrane protein	TagL
12	YPC_0823	828705..829196 [+], 492	384413440	hypothetical protein	TssD
13	YPC_0824	829614..832262 [+], 2649	384413441	Clp ATPase	TssH
14	YPC_0825	832259..834607 [+], 2349	384413442	hypothetical protein	TssI
15	YPC_0826	834622..836844 [+], 2223	384413443	hypothetical protein
16	YPC_0827	836955..837344 [+], 390	384413444	hypothetical protein
17	YPC_0828	837771..838046 [+], 276	384413445	insertion sequence protein
18	YPC_0829	838100..838435 [+], 336	384413446	Insertion sequence protein
19	YPC_0830	838967..839602 [+], 636	384413447	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	YPC_0823	828705..829196 [+], 492	384413440	hypothetical protein	EC042_4529

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Proteins        Genes

N/A

N/A