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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YP_3657 (tbpA) | 4158781..4159773 [+], 993 | 45443389 | thiamine transporter substrate binding subunit | |
2 | YP_3658 (thiP) | 4159737..4161356 [+], 1620 | 45443390 | thiamine transporter membrane protein | |
3 | YP_3659 (thiQ) | 4161343..4162053 [+], 711 | 229220776 | thiamine transporter ATP-binding subunit | |
4 | YP_3660 (dedA5) | 4162122..4162889 [-], 768 | 45443392 | DedA family membrane protein | |
5 | YP_3661 (polB) | 4163085..4165454 [+], 2370 | 45443393 | DNA polymerase II | |
6 | YP_3662 (hepA) | 4165915..4168821 [+], 2907 | 45443394 | ATP-dependent helicase HepA | |
7 | YP_3663 | 4169077..4169436 [-], 360 | 45443395 | hypothetical protein | |
8 | YP_3664 (icmF3) | 4169452..4172946 [-], 3495 | 45443396 | hypothetical protein | TssM |
9 | YP_3665 | 4172955..4174592 [-], 1638 | 45443397 | hypothetical protein | TssL |
10 | YP_3666 | 4174562..4175935 [-], 1374 | 45443398 | hypothetical protein | TssK |
11 | YP_3667 | 4176019..4176510 [-], 492 | 45443399 | lipoprotein | TssJ |
12 | YP_3668 | 4176503..4176868 [-], 366 | 45443400 | hypothetical protein | PAAR |
13 | YP_3669 | 4176874..4177491 [-], 618 | 45443401 | hypothetical protein | |
14 | YP_3670 | 4177484..4178587 [-], 1104 | 45443402 | hypothetical protein | |
15 | YP_3671 | 4178613..4180832 [-], 2220 | 45443403 | hypothetical protein | |
16 | YP_3672 (vgrG5) | 4180845..4183193 [-], 2349 | 45443404 | hypothetical protein | TssI |
17 | YP_3673 (clpB2) | 4183297..4185900 [-], 2604 | 45443405 | Clp ATPase | TssH |
18 | YP_3674 | 4185903..4186925 [-], 1023 | 45443406 | hypothetical protein | TssG |
19 | YP_3675 | 4186879..4188723 [-], 1845 | 45443407 | hypothetical protein | TssF |
20 | YP_3676 | 4188756..4189199 [-], 444 | 45443408 | hypothetical protein | TssE |
21 | YP_3677 | 4189273..4189791 [-], 519 | 45443409 | hypothetical protein | TssD |
22 | YP_3678 | 4189954..4191465 [-], 1512 | 45443410 | hypothetical protein | TssC |
23 | YP_3679 | 4191465..4192025 [-], 561 | 45443411 | hypothetical protein | TssB |
24 | YP_3680 | 4192036..4193049 [-], 1014 | 45443412 | hypothetical protein | TssA |
25 | YP_3681 | 4193379..4194122 [+], 744 | 45443413 | hypothetical protein | |
26 | YP_3682 (rluA3) | 4195345..4195965 [+], 621 | 45443414 | ribosomal large subunit pseudouridine synthase A | |
27 | YP_3683 (djlA) | 4196263..4197096 [-], 834 | 45443415 | Dna-J like membrane chaperone protein | |
28 | YP_3684 (imp) | 4197281..4199623 [+], 2343 | 45443416 | organic solvent tolerance protein | |
29 | YP_3685 (surA) | 4199691..4200995 [+], 1305 | 45443417 | peptidyl-prolyl cis-trans isomerase SurA | |
30 | YP_3686 (pdxA) | 4200967..4201974 [+], 1008 | 45443418 | 4-hydroxythreonine-4-phosphate dehydrogenase | |
31 | YP_3687 (ksgA) | 4201967..4202785 [+], 819 | 45443419 | dimethyladenosine transferase | |
32 | YP_3688 (apaG) | 4202799..4203176 [+], 378 | 45443420 | ApaG protein | |
33 | YP_3689 (apaH) | 4203193..4204062 [+], 870 | 45443421 | diadenosine tetraphosphatase | |
34 | YP_3690 | 4204152..4204616 [-], 465 | 45443422 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein