 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPC_1440 (mltB) | 1410333..1411427 [+], 1095 | 384413988 | membrane-bound lytic murein transglycosylase B | |
2 | YPC_1441 | 1411636..1411776 [+], 141 | 384413989 | hypothetical protein | |
3 | YPC_1442 | 1412693..1413295 [+], 603 | 384413990 | putative luxR-family regulatory protein | |
4 | YPC_1443 | 1413653..1414135 [-], 483 | 384413991 | hypothetical protein | |
5 | YPC_1444 | 1414132..1415814 [-], 1683 | 384413992 | putative OMPA family outer membrane porinprecursor | TagL |
6 | YPC_1445 | 1415815..1416516 [-], 702 | 384413993 | hypothetical protein | |
7 | YPC_1446 | 1416513..1417850 [-], 1338 | 384413994 | hypothetical protein | |
8 | YPC_1447 | 1417890..1418921 [-], 1032 | 384413995 | putative fimbrial protein | |
9 | YPC_1448 | 1418928..1420109 [-], 1182 | 384413996 | hypothetical protein | TssA |
10 | YPC_1449 | 1420208..1421233 [-], 1026 | 384413997 | hypothetical protein | TssG |
11 | YPC_1450 | 1421233..1423113 [-], 1881 | 384413998 | hypothetical protein | TssF |
12 | YPC_1451 | 1423251..1423349 [-], 99 | 384413999 | hypothetical protein | |
13 | YPC_1452 | 1423821..1426571 [+], 2751 | 384414000 | ClpB protein | TssH |
14 | YPC_1453 | 1426772..1427317 [+], 546 | 384414001 | frimbrial protein | |
15 | YPC_1454 | 1427474..1428235 [+], 762 | 384414002 | putative pili chaperone protein | |
16 | YPC_1455 | 1428363..1429913 [+], 1551 | 384414003 | putative outer membrane fimbrial usher porinprecursor | |
17 | YPC_1456 | 1429935..1431143 [-], 1209 | 384414004 | putative transposase | |
18 | YPC_1457 | 1431168..1432358 [+], 1191 | 384414005 | putative outer membrane fimbrial usher porinprecursor | |
19 | YPC_1458 | 1432343..1432951 [+], 609 | 384414006 | fimbrial protein | |
20 | YPC_1459 | 1433056..1433580 [+], 525 | 384414007 | hypothetical protein | TssB |
21 | YPC_1460 | 1433604..1435106 [+], 1503 | 384414008 | hypothetical protein | TssC |
22 | YPC_1461 | 1435432..1435917 [+], 486 | 384414009 | hypothetical protein | TssD |
23 | YPC_1462 | 1436170..1436730 [+], 561 | 384414010 | putative exported protein precursor | TssJ |
24 | YPC_1463 | 1436734..1438083 [+], 1350 | 384414011 | hypothetical protein | TssK |
25 | YPC_1464 | 1438116..1438748 [+], 633 | 384414012 | Flagellar motor rotation protein motB | TssL |
26 | YPC_1465 | 1438762..1439784 [+], 1023 | 384414013 | transposase | |
27 | YPC_1466 | 1439781..1440563 [+], 783 | 384414014 | transposase | |
28 | YPC_1467 | 1440579..1441415 [+], 837 | 384414015 | putative OmpA family protein | TssL |
29 | YPC_1468 | 1441402..1441542 [+], 141 | 384414016 | hypothetical protein | |
30 | YPC_1469 | 1441424..1443829 [+], 2406 | 384414017 | hypothetical protein | TssM |
31 | YPC_1470 | 1443835..1445250 [+], 1416 | 384414018 | hypothetical protein | TssM |
32 | YPC_1471 | 1445544..1448129 [+], 2586 | 384414019 | hypothetical protein | TssI |
33 | YPC_1472 | 1448228..1448488 [+], 261 | 384414020 | hypothetical protein | PAAR |
34 | YPC_1473 | 1448488..1449336 [+], 849 | 384414021 | hypothetical protein | |
35 | YPC_1474 | 1449356..1450162 [+], 807 | 384414022 | Protein of avirulence locus ImpE | TagJ |
36 | YPC_1475 | 1450307..1450786 [+], 480 | 384414023 | hypothetical protein | TssE |
37 | YPC_1476 | 1450811..1451158 [+], 348 | 384414024 | hypothetical protein | |
38 | YPC_1477 | 1451233..1451574 [-], 342 | 384414025 | hypothetical protein | |
39 | YPC_1478 | 1451913..1452020 [-], 108 | 384414026 | hypothetical protein | |
40 | YPC_1479 | 1451950..1453989 [-], 2040 | 384414027 | hypothetical protein | |
41 | YPC_1480 (lemA) | 1453994..1454536 [-], 543 | 384414028 | hypothetical protein | |
42 | YPC_1482 | 1455106..1455225 [+], 120 | 384414029 | hypothetical protein | |
43 | YPC_1483 | 1455152..1455619 [+], 468 | 384414030 | hypothetical protein | |
44 | YPC_1484 | 1455639..1455734 [-], 96 | 384414031 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein