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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | YPC_4008 (djlA) | 3866137..3866970 [+], 834 | 384416363 | DnaJ-like membrane chaperone protein | |
2 | YPC_4009 (rluA) | 3867268..3867888 [-], 621 | 384416364 | Ribosomal large subunit pseudouridine synthase A | |
3 | YPC_4010 | 3869111..3869854 [-], 744 | 384416365 | hypothetical protein | |
4 | YPC_4011 | 3870184..3871197 [+], 1014 | 384416366 | hypothetical protein | TssA |
5 | YPC_4012 | 3871208..3871768 [+], 561 | 384416367 | hypothetical protein | TssB |
6 | YPC_4013 | 3871768..3873279 [+], 1512 | 384416368 | hypothetical protein | TssC |
7 | YPC_4014 | 3873442..3873960 [+], 519 | 384416369 | hypothetical protein | TssD |
8 | YPC_4015 | 3874034..3874477 [+], 444 | 384416370 | hypothetical protein | TssE |
9 | YPC_4016 | 3874510..3876354 [+], 1845 | 384416371 | hypothetical protein | TssF |
10 | YPC_4017 | 3876347..3877330 [+], 984 | 384416372 | hypothetical protein | TssG |
11 | YPC_4018 | 3877333..3879936 [+], 2604 | 384416373 | ClpB protein | TssH |
12 | YPC_4019 | 3880040..3882388 [+], 2349 | 384416374 | hypothetical protein | TssI |
13 | YPC_4020 | 3882401..3884620 [+], 2220 | 384416375 | hypothetical protein | |
14 | YPC_4021 | 3884646..3885749 [+], 1104 | 384416376 | hypothetical protein | |
15 | YPC_4022 | 3885742..3886359 [+], 618 | 384416377 | hypothetical protein | |
16 | YPC_4023 | 3886365..3886730 [+], 366 | 384416378 | hypothetical protein | PAAR |
17 | YPC_4024 | 3886723..3887214 [+], 492 | 384416379 | putative lipoprotein | TssJ |
18 | YPC_4025 | 3887334..3888689 [+], 1356 | 384416380 | hypothetical protein | TssK |
19 | YPC_4028 | 3890344..3893796 [+], 3453 | 384416381 | hypothetical protein | TssM |
20 | YPC_4029 | 3893818..3894171 [+], 354 | 384416382 | hypothetical protein | |
21 | YPC_4030 | 3894250..3894465 [+], 216 | 384416383 | hypothetical protein | |
22 | YPC_4031 (hepA) | 3894427..3897333 [-], 2907 | 384416384 | ATP-dependent helicase HepA | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein