I. Summary

SecReT6 ID	595
Strain	Xanthomonas oryzae pv. oryzicola BLS256
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017267
Location	2567491..2593866
Comment
Function	N/A
T6SS Type	Type i; subtype i3
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	2	0	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	XOC_2524	2562905..2563231 [-], 327	384419450	hypothetical protein
2	XOC_2525	2563228..2566131 [-], 2904	384419451	protein kinase
3	XOC_2526	2566128..2566850 [-], 723	384419452	phosphoprotein phosphatase
4	XOC_2527	2566847..2567485 [-], 639	384419453	hypothetical protein
5	XOC_2528	2567491..2570949 [-], 3459	384419454	ImcF-related family	TssM
6	XOC_2529	2570953..2572269 [-], 1317	384419455	OmpA family membrane protein	TssL
7	XOC_2530	2572271..2573608 [-], 1338	384419456	protein ImpJ	TssK
8	XOC_2531	2573605..2575002 [-], 1398	384419457	FHA domain-containing protein	Fha
9	XOC_2532	2575008..2575547 [-], 540	384419458	hypothetical protein
10	XOC_2533	2575556..2577634 [-], 2079	384419459	Rhs-family protein	TssI
11	XOC_2534	2577757..2578035 [-], 279	384419460	hypothetical protein
12	XOC_2535	2578289..2578546 [-], 258	384419461	transposase
13	XOC_2536	2579277..2580293 [-], 1017	384419462	transposase
14	XOC_2537	2580934..2583639 [-], 2706	384419463	chaperone ClpB	TssH
15	XOC_2538	2583672..2584682 [-], 1011	384419464	hypothetical protein	TssG
16	XOC_2539	2584646..2586523 [-], 1878	384419465	SciC protein	TssF
17	XOC_2540	2586527..2587030 [-], 504	384419466	hypothetical protein	TssE
18	XOC_2541	2587018..2587851 [-], 834	384419467	ImpE protein	TagJ
19	XOC_2542	2587887..2588390 [-], 504	384419468	hypothetical protein	TssD
20	XOC_2543	2588490..2589992 [-], 1503	384419469	SciI protein	TssC
21	XOC_2544	2589997..2590632 [-], 636	384419470	hypothetical protein	TssB
22	XOC_2545	2591104..2593866 [+], 2763	384419471	Rhs element Vgr protein	TssI
23	XOC_2546	2593868..2594713 [+], 846	384419472	hypothetical protein
24	XOC_2547	2594753..2597599 [+], 2847	384419473	hypothetical protein
25	XOC_2548	2597705..2598631 [+], 927	384419474	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files

Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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