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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | VCLMA_B0092 | 110066..111745 [-], 1680 | 384422624 | Pseudouridylate synthase, 23S RNA-specific | |
2 | VCLMA_B0093 | 112517..112801 [+], 285 | 384422625 | Uropathogenic specific protein | PAAR |
3 | VCLMA_B0094 | 112869..113789 [+], 921 | 384422626 | hypothetical protein | |
4 | VCLMA_B0095 | 114221..114727 [+], 507 | 384422627 | hypothetical protein | TssB |
5 | VCLMA_B0096 | 114771..116246 [+], 1476 | 384422628 | hypothetical protein | TssC |
6 | VCLMA_B0097 | 116249..116686 [+], 438 | 384422629 | hypothetical protein | TssE |
7 | VCLMA_B0098 | 116692..118461 [+], 1770 | 384422630 | protein ImpG/VasA | TssF |
8 | VCLMA_B0099 | 118647..119441 [+], 795 | 384422631 | protein ImpH/VasB | TssG |
9 | VCLMA_B0100 | 119444..120931 [+], 1488 | 384422632 | protein ImpI/VasC | Fha |
10 | VCLMA_B0101 | 120934..121410 [+], 477 | 384422633 | Type VI secretion lipoprotein/VasD | TssJ |
11 | VCLMA_B0102 | 121417..122751 [+], 1335 | 384422634 | hypothetical protein | TssK |
12 | VCLMA_B0103 | 122754..123527 [+], 774 | 384422635 | Outer membrane protein ImpK/VasF, OmpA/MotB domain protein | TssL |
13 | VCLMA_B0104 | 123553..126162 [+], 2610 | 384422636 | ClpB protein | TssH |
14 | VCLMA_B0105 | 126165..127757 [+], 1593 | 384422637 | Sigma-54 dependent transcriptional regulator | VasH |
15 | VCLMA_B0106 | 127754..128410 [+], 657 | 384422638 | Type VI secretion protein VasI | VCA0118 |
16 | VCLMA_B0107 | 128420..129829 [+], 1410 | 384422639 | hypothetical protein | TssA |
17 | VCLMA_B0108 | 129845..133390 [+], 3546 | 384422640 | IcmF-like protein | TssM |
18 | VCLMA_B0109 | 133441..134706 [+], 1266 | 384422641 | Type VI secretion-like protein VasL | TssA |
19 | VCLMA_B0110 | 134938..137457 [+], 2520 | 384422642 | VgrG-3 protein | TssI |
20 | VCLMA_B0111 | 138764..139024 [-], 261 | 384422643 | hypothetical protein | |
21 | VCLMA_B0112 | 139308..139727 [+], 420 | 384422644 | ribose ABC transporter high affinity permease RbsD | |
22 | VCLMA_B0113 | 139754..141256 [+], 1503 | 384422645 | ribose ABC transporter ATP-binding protein RbsA | |
23 | VCLMA_B0114 | 141271..142251 [+], 981 | 384422646 | ribose ABC transporter permease RbsC | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein