I. Summary

SecReT6 ID	597
Strain	Edwardsiella tarda FL6-60
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017309
Location	2506140..2526090
Comment
Function	N/A
T6SS Type	Type i; subtype i4b
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	ETAF_2193	2501471..2501752 [-], 282	387868321	hypothetical protein
2	ETAF_2194	2501791..2502339 [-], 549	387868322	Putative transporting ATPase
3	ETAF_2195 (yfcA)	2502440..2503240 [-], 801	387868323	Putative membrane protein YfcA
4	ETAF_2196	2503544..2504773 [-], 1230	387868324	hypothetical protein
5	ETAF_2197	2505147..2505278 [-], 132	387868325	hypothetical protein
6	ETAF_2198 (evpP)	2505588..2505890 [+], 303	387868326	type VI secretion system protein EvpP	EvpP (e)
7	ETAF_2199 (evpA)	2506140..2506655 [+], 516	387868327	type VI secretion system protein EvpA	TssB
8	ETAF_2200 (evpB)	2506652..2508139 [+], 1488	387868328	type VI secretion system protein EvpB	TssC
9	ETAF_2201 (evpC)	2508209..2508700 [+], 492	387868329	type VI secretion system protein EvpC	TssD
10	ETAF_2202 (evpD)	2508800..2510002 [+], 1203	387868330	type VI secretion system protein EvpD
11	ETAF_2203 (evpE)	2510011..2510487 [+], 477	387868331	type VI secretion system protein EvpE	TssE
12	ETAF_2204 (evpF)	2510491..2512332 [+], 1842	387868332	type VI secretion system protein EvpF	TssF
13	ETAF_2205 (evpG)	2512329..2513354 [+], 1026	387868333	type VI secretion system protein EvpG	TssG
14	ETAF_2206 (evpH)	2513473..2516085 [+], 2613	387868334	type VI secretion system protein EvpH	TssH
15	ETAF_2207 (evpI)	2516085..2518070 [+], 1986	387868335	type VI secretion system protein EvpI	TssI
16	ETAF_2208 (evpJ)	2518165..2518467 [+], 303	387868336	type VI secretion system protein EvpJ	PAAR
17	ETAF_2209 (evpK)	2518481..2519548 [+], 1068	387868337	type VI secretion system protein EvpK	TssA
18	ETAF_2210 (evpL)	2519496..2520176 [+], 681	387868338	type VI secretion system protein EvpL	TssJ
19	ETAF_2211 (evpM)	2520276..2521664 [+], 1389	387868339	type VI secretion system protein EvpM	TssK
20	ETAF_2212 (evpN)	2521661..2522311 [+], 651	387868340	type VI secretion system protein EvpN	TssL
21	ETAF_2213 (evpO)	2522299..2526090 [+], 3792	387868341	type VI secretion system protein EvpO	TssM
22	ETAF_2214	2526222..2527052 [-], 831	387868342	Murein endopeptidase
23	ETAF_2215 (aroG)	2527066..2528151 [-], 1086	387868343	Chorismate synthase AroG
24	ETAF_2216	2528243..2529175 [-], 933	387868344	Ribosomal protein L3 methyltransferase
25	ETAF_2217	2529350..2529931 [+], 582	387868345	hypothetical protein
26	ETAF_2218 (sixA)	2529982..2530458 [-], 477	387868346	phosphohistidine phosphatase SixA
27	ETAF_2219	2530850..2531074 [-], 225	387868347	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

EvpP , EvpC, EvpI

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	ETAF_2198(evpP)	2505588..2505890 [+], 303	387868326	type VI secretion system protein EvpP	EvpP
2	ETAF_2201(evpC)	2508209..2508700 [+], 492	387868329	type VI secretion system protein EvpC	EvpC
3	ETAF_2207(evpI)	2516085..2518070 [+], 1986	387868335	type VI secretion system protein EvpI	EvpI

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Proteins        Genes

N/A

N/A