SecReT6
I. Summary
SecReT6 ID598 insolico
StrainShigella flexneri 2002017
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017328
Location229168..233177
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number000010011
ComponentTssGTssJTssKTssM
Number1000
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1SFxv_0209 (mltD)224639..225985 [-], 1347384541778Transcriptional regulator for nitrite reductase 
2SFxv_0210 (gloB)226057..226812 [-], 756384541779Hydroxyacylglutathione hydrolase 
3SFxv_0211226843..227568 [+], 726384541780hypothetical protein 
4SFxv_0213 (rnhA)227565..228143 [-], 579384541781RNase HI 
5SFxv_0212 (dnaQ)228088..228828 [+], 741384541782DNA polymerase III subunit epsilon 
6SFxv_0214229168..230214 [-], 1047384541783putative cytoplasmic protein  TssA
7SFxv_0215230225..230338 [-], 114384541784putative cytoplasmic protein 
8SFxv_0216230482..230787 [-], 306384541785Periplasmic chaperone of fimbral assembly machinery  TssG
9SFxv_0217230784..232667 [-], 1884384541786Outer membrane usher protein  TssF
10SFxv_0218232683..233177 [-], 495384541787SciD protein  TssE
11SFxv_0219233372..234004 [-], 633384541788SciE protein  TagJ
12SFxv_0220233991..234368 [-], 378384541789SciF protein 
13SFxv_0221234606..234905 [-], 300384541790SciF protein 
14SFxv_0222235090..235368 [+], 279384541791Insertion element IS2A putative protein 
15SFxv_0226236289..236576 [-], 288384541792hypothetical protein 
16SFxv_0227237463..237822 [+], 360384541793IS911 orfA 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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