I. Summary

SecReT6 ID	598
Strain	Shigella flexneri 2002017
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017328
Location	229168..233177
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	0	0	1	0	0	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	0	0	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	SFxv_0209 (mltD)	224639..225985 [-], 1347	384541778	Transcriptional regulator for nitrite reductase
2	SFxv_0210 (gloB)	226057..226812 [-], 756	384541779	Hydroxyacylglutathione hydrolase
3	SFxv_0211	226843..227568 [+], 726	384541780	hypothetical protein
4	SFxv_0213 (rnhA)	227565..228143 [-], 579	384541781	RNase HI
5	SFxv_0212 (dnaQ)	228088..228828 [+], 741	384541782	DNA polymerase III subunit epsilon
6	SFxv_0214	229168..230214 [-], 1047	384541783	putative cytoplasmic protein	TssA
7	SFxv_0215	230225..230338 [-], 114	384541784	putative cytoplasmic protein
8	SFxv_0216	230482..230787 [-], 306	384541785	Periplasmic chaperone of fimbral assembly machinery	TssG
9	SFxv_0217	230784..232667 [-], 1884	384541786	Outer membrane usher protein	TssF
10	SFxv_0218	232683..233177 [-], 495	384541787	SciD protein	TssE
11	SFxv_0219	233372..234004 [-], 633	384541788	SciE protein	TagJ
12	SFxv_0220	233991..234368 [-], 378	384541789	SciF protein
13	SFxv_0221	234606..234905 [-], 300	384541790	SciF protein
14	SFxv_0222	235090..235368 [+], 279	384541791	Insertion element IS2A putative protein
15	SFxv_0226	236289..236576 [-], 288	384541792	hypothetical protein
16	SFxv_0227	237463..237822 [+], 360	384541793	IS911 orfA

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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