I. Summary
SecReT6 ID60 insolico
StrainYersinia pestis biovar Microtus str. 91001
Repliconchromosome [Browse all T6SS(s) in this replicon]
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1YP_3929 (mviM6)4468029..4469159 [+], 113145443657oxidoreductase 
2YP_39304469156..4470055 [+], 90045443658hypothetical protein 
3YP_39314470457..4471665 [+], 120945443659transposase for the IS285 insertion element 
4YP_39324471725..4472519 [-], 79545443660hypothetical protein 
5YP_3933 (rhsA3)4472528..4477069 [-], 454245443661hypothetical protein  PAAR
6YP_39344477108..4477530 [-], 42345443662hypothetical protein 
7YP_3935 (vgrG6)4477533..4479731 [-], 219945443663Rhs accessory genetic element  TssI
8YP_39364479753..4479929 [-], 17745443664hypothetical protein 
9YP_3937 (hipB6)4480011..4480499 [+], 48945443665transcriptional regulator 
10YP_39384480581..4480805 [+], 22545443666hypothetical protein 
11YP_39394480881..4481072 [+], 19245443667hypothetical protein 
12YP_39404481122..4481607 [-], 48645443668hypothetical protein 
13YP_3941 (rhsA4)4481609..4482979 [-], 137145443669Rhs family protein 
14YP_3942 (rhsA5)4483007..4485898 [-], 289245443670hypothetical protein  PAAR
15YP_39434485864..4486322 [-], 45945443671hypothetical protein 
16YP_3944 (vgrG7)4486328..4488730 [-], 240345443672Rhs accessory genetic element  TssI
17YP_39454488752..4489285 [-], 53445443673hypothetical protein  TssA
18YP_39464489282..4490064 [-], 78345443674hypothetical protein  TssA
19YP_3947 (icmF4)4490189..4493722 [-], 353445443675hypothetical protein  TssM
20YP_39484493754..4495160 [-], 140745443676hypothetical protein  TssA
21YP_39494495148..4495843 [-], 69645443677hypothetical protein 
22YP_39504495831..4496628 [-], 79845443678hypothetical protein 
23YP_3951 (clpB4)4496625..4499228 [-], 260445443679Clp ATPase  TssH
24YP_39524499239..4500006 [-], 76845443680hypothetical protein  TssL
25YP_39534500006..4501352 [-], 134745443681hypothetical protein  TssK
26YP_39544501355..4501900 [-], 54645443682lipoprotein  TssJ
27YP_39554501900..4503216 [-], 131745443683FHA-domain-containing protein  Fha
28YP_39564503342..4504439 [-], 109845443684hypothetical protein  TssG
29YP_39584505167..4505703 [+], 53745443685IS1661 DNA-binding protein 
30YP_3959 (tra5H)4505757..4506542 [+], 78645443686IS1661 transposase 
31YP_3960 (mdfA)4507015..4508244 [+], 123045443687multidrug translocase 
32YP_39614508690..4508875 [+], 18645443688hypothetical protein 
33YP_3962 (araH18)4508948..4509535 [+], 58845443689hypothetical protein 
34YP_39634509549..4509881 [-], 33345443690hypothetical protein 
35YP_3966 (selA)4512591..4513985 [-], 139545443691selenocysteine synthase 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

(1) Boyer F et al. (2009). Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources. BMC Genomics. 10:104. [PudMed:19284603] in_silico
in_silico This literature contains bioinformatics investigation