SecReT6
I. Summary
SecReT6 ID602 insolico
StrainGeobacter sulfurreducens KN400
Repliconchromosome [Browse all T6SS(s) in this replicon]
AccessionNC_017454
Location422979..430690
Comment
FunctionN/A
insolico Bioinformatics investigation has been performed on this T6SS.

II. T6SS components
ComponentTssHTssDTssLTssITssATssBTssCTssETssF
Number100000011
ComponentTssGTssJTssKTssM
Number1110
III. genome coordinates of the T6SS gene cluster
#Locus tag (Gene)Coordinates [+/-], size (bp)Protein GIProductNote
1KN400_0390 (fliN)418401..418706 [+], 306409910972flagellar motor switch protein FliN 
2KN400_0391 (fliO)418703..419200 [+], 498409910973flagellar biogenesis protein FliO 
3KN400_0392 (fliP)419206..419973 [+], 768409910974flagellar biogenesis protein FliP 
4KN400_0393 (fliQ)419986..420255 [+], 270409910975flagellar biogenesis protein FliQ 
5KN400_0394 (fliR)420306..421100 [+], 795409910976flagellar biogenesis protein FliR 
6KN400_0395 (flhB)421105..422163 [+], 1059409910977flagellar biogenesis protein FlhB 
7KN400_0396422222..422692 [-], 471409910978SH3 domain lipoprotein 
8KN400_0397 (tssJ)422979..423533 [+], 555409910979type VI secretion system outer membrane lipoprotein TssJ  TssJ
9KN400_0398 (tssK)423530..424921 [+], 1392409910980type VI secretion system protein TssK  TssK
10KN400_0399 (tssE)424925..425332 [+], 408409910981type VI secretion system needle hub protein TssE  TssE
11KN400_0400 (tssF)425361..427094 [+], 1734409910982type VI secretion system protein TssF  TssF
12KN400_0401 (tssG)427058..428050 [+], 993409910983type VI secretion system protein TssG  TssG
13KN400_0402 (tssH)428063..430690 [+], 2628409910984type VI secretion system ATPase TssH, putative chaperone  TssH
14KN400_0403430700..431704 [-], 1005409910985thiamin biosynthesis protein ThiI-related adenine nucleotide alpha hydrolase superfamily protein 
15KN400_0404431878..433527 [+], 1650409910986PilB/PulE/GspE family ATPase 
16KN400_0405 (pilT-3)433541..434611 [+], 1071409910987twitching motility pilus retraction protein 
17KN400_0406434641..435075 [-], 435409910988hypothetical protein 
 
flank Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

Download FASTA format files
Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.
1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.
 






2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.
 






3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.
 






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