I. Summary

SecReT6 ID	602
Strain	Geobacter sulfurreducens KN400
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017454
Location	422979..430690
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	0	0	0	0	0	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	0

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KN400_0390 (fliN)	418401..418706 [+], 306	409910972	flagellar motor switch protein FliN
2	KN400_0391 (fliO)	418703..419200 [+], 498	409910973	flagellar biogenesis protein FliO
3	KN400_0392 (fliP)	419206..419973 [+], 768	409910974	flagellar biogenesis protein FliP
4	KN400_0393 (fliQ)	419986..420255 [+], 270	409910975	flagellar biogenesis protein FliQ
5	KN400_0394 (fliR)	420306..421100 [+], 795	409910976	flagellar biogenesis protein FliR
6	KN400_0395 (flhB)	421105..422163 [+], 1059	409910977	flagellar biogenesis protein FlhB
7	KN400_0396	422222..422692 [-], 471	409910978	SH3 domain lipoprotein
8	KN400_0397 (tssJ)	422979..423533 [+], 555	409910979	type VI secretion system outer membrane lipoprotein TssJ	TssJ
9	KN400_0398 (tssK)	423530..424921 [+], 1392	409910980	type VI secretion system protein TssK	TssK
10	KN400_0399 (tssE)	424925..425332 [+], 408	409910981	type VI secretion system needle hub protein TssE	TssE
11	KN400_0400 (tssF)	425361..427094 [+], 1734	409910982	type VI secretion system protein TssF	TssF
12	KN400_0401 (tssG)	427058..428050 [+], 993	409910983	type VI secretion system protein TssG	TssG
13	KN400_0402 (tssH)	428063..430690 [+], 2628	409910984	type VI secretion system ATPase TssH, putative chaperone	TssH
14	KN400_0403	430700..431704 [-], 1005	409910985	thiamin biosynthesis protein ThiI-related adenine nucleotide alpha hydrolase superfamily protein
15	KN400_0404	431878..433527 [+], 1650	409910986	PilB/PulE/GspE family ATPase
16	KN400_0405 (pilT-3)	433541..434611 [+], 1071	409910987	twitching motility pilus retraction protein
17	KN400_0406	434641..435075 [-], 435	409910988	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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