I. Summary

SecReT6 ID	603
Strain	Geobacter sulfurreducens KN400
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017454
Location	3363993..3381428
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	1	1	1	1	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	0	1

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III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KN400_3096 (cysM)	3359178..3360104 [-], 927	409913601	cysteine synthase B
2	KN400_3098	3360218..3360808 [+], 591	409913602	NUDIX hydrolase, coenzyme A pyrophosphatase family
3	KN400_3099 (truC)	3360814..3361566 [+], 753	409913603	tRNA pseudouridine 65 synthase
4	KN400_3100 (msrA)	3361651..3362139 [+], 489	409913604	peptide methionine sulfoxide reductase, S-isomer-specific
5	KN400_3101 (ltaA)	3362235..3363281 [+], 1047	409913605	L-allo-threonine aldolase, stereospecific
6	KN400_3103	3363278..3363646 [+], 369	409913606	glutaredoxin-like protein, selenocysteine-containing
7	KN400_3104 (tssL)	3363993..3364676 [+], 684	409913607	type VI secretion system inner membrane protein TssL	TssL
8	KN400_3105 (tssM)	3364678..3368142 [+], 3465	409913608	type VI secretion system ATPase and inner membrane protein TssM	TssM
9	KN400_3106	3368189..3370558 [+], 2370	409913609	type VI secretion system protein	TssA
10	KN400_3107	3370565..3371758 [+], 1194	409913610	hypothetical protein
11	KN400_3108	3371758..3372426 [+], 669	409913611	hypothetical protein	PAAR
12	KN400_3109	3372423..3373451 [+], 1029	409913612	lipoprotein
13	KN400_3110	3373467..3375083 [+], 1617	409913613	hypothetical protein
14	KN400_3111 (tssB)	3375185..3375670 [+], 486	409913614	type VI secretion system needle sheath protein TssB	TssB
15	KN400_3112 (tssC)	3375681..3377165 [+], 1485	409913615	type VI secretion system needle sheath protein TssC	TssC
16	KN400_3113 (tssD)	3377247..3377732 [+], 486	409913616	type VI secretion system needle tube protein TssD	TssD
17	KN400_3519	3377851..3378306 [+], 456	409913617	hypothetical protein
18	KN400_3520	3378361..3379278 [+], 918	409913618	LysM domain-containing protein
19	KN400_3114 (tssI)	3379335..3381428 [+], 2094	409913619	type VI secretion system needle syringe protein TssI	TssI
20	KN400_3115	3381460..3381960 [+], 501	409913620	hypothetical protein
21	KN400_3116	3381981..3383234 [+], 1254	409913621	hypothetical protein
22	KN400_3117	3383231..3384274 [+], 1044	409913622	hypothetical protein
23	KN400_3118	3384294..3384674 [+], 381	409913623	hypothetical protein	PAAR
24	KN400_3119	3384726..3385103 [+], 378	409913624	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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