 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | HP15_3459 | 3639247..3640104 [-], 858 | 385333200 | hypothetical protein | |
2 | HP15_3460 | 3640094..3642742 [-], 2649 | 385333201 | hypothetical protein | |
3 | HP15_3461 | 3642954..3643820 [-], 867 | 385333202 | hypothetical protein | |
4 | HP15_3462 | 3643820..3645943 [-], 2124 | 385333203 | ImpA family type VI secretion-associated protein | TssI |
5 | HP15_3463 | 3646015..3649608 [-], 3594 | 385333204 | type VI secretion protein IcmF | TssM |
6 | HP15_3464 | 3649641..3651095 [-], 1455 | 385333205 | ImpA domain-containing protein | TssA |
7 | HP15_3465 | 3651112..3651744 [-], 633 | 385333206 | type VI secretion system-associated, VCA0118 | |
8 | HP15_3466 | 3651756..3653327 [-], 1572 | 385333207 | two component Fis family sigma54-specific transcriptional regulator | |
9 | HP15_3467 | 3653408..3656041 [-], 2634 | 385333208 | type VI secretion ATPase, ClpV1 family | TssH |
10 | HP15_3468 | 3656052..3656879 [-], 828 | 385333209 | hypothetical protein | TssL |
11 | HP15_3469 | 3656883..3658217 [-], 1335 | 385333210 | hypothetical protein | TssK |
12 | HP15_3470 | 3658217..3658750 [-], 534 | 385333211 | lipoprotein | TssJ |
13 | HP15_3471 | 3658747..3660045 [-], 1299 | 385333212 | type VI secretion system, FHA domain-containing protein | Fha |
14 | HP15_3472 | 3660084..3661010 [-], 927 | 385333213 | hypothetical protein | TssG |
15 | HP15_3473 | 3661064..3662836 [-], 1773 | 385333214 | type VI secretion system, VCA0110 | TssF |
16 | HP15_3474 | 3662983..3663423 [-], 441 | 385333215 | type VI secretion system, lysozyme-related protein | TssE |
17 | HP15_3475 | 3663427..3664908 [-], 1482 | 385333216 | hypothetical protein | TssC |
18 | HP15_3476 | 3664965..3665462 [-], 498 | 385333217 | hypothetical protein | TssB |
19 | HP15_3477 | 3665741..3666001 [+], 261 | 385333218 | acyl-coA-binding protein, ACBP | |
20 | HP15_3478 | 3666135..3666452 [+], 318 | 385333219 | integron integrase-like protein | |
21 | HP15_3480 | 3666462..3666746 [-], 285 | 385333220 | hypothetical protein | |
22 | HP15_3479 | 3666745..3666882 [+], 138 | 385333221 | hypothetical protein | |
23 | HP15_3481 (greB) | 3667023..3667538 [-], 516 | 385333222 | transcription elongation factor GreB | |
24 | HP15_3482 | 3667841..3668122 [+], 282 | 385333223 | hypothetical protein | |
25 | HP15_3483 | 3668140..3669552 [-], 1413 | 385333224 | two-component, sensor histidine kinase | |
26 | HP15_3484 | 3669593..3670273 [-], 681 | 385333225 | DNA-binding response regulator | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein