I. Summary

SecReT6 ID	604
Strain	Marinobacter adhaerens HP15
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017506
Location	3643820..3665462
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	1	1	1	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	HP15_3459	3639247..3640104 [-], 858	385333200	hypothetical protein
2	HP15_3460	3640094..3642742 [-], 2649	385333201	hypothetical protein
3	HP15_3461	3642954..3643820 [-], 867	385333202	hypothetical protein
4	HP15_3462	3643820..3645943 [-], 2124	385333203	ImpA family type VI secretion-associated protein	TssI
5	HP15_3463	3646015..3649608 [-], 3594	385333204	type VI secretion protein IcmF	TssM
6	HP15_3464	3649641..3651095 [-], 1455	385333205	ImpA domain-containing protein	TssA
7	HP15_3465	3651112..3651744 [-], 633	385333206	type VI secretion system-associated, VCA0118
8	HP15_3466	3651756..3653327 [-], 1572	385333207	two component Fis family sigma54-specific transcriptional regulator
9	HP15_3467	3653408..3656041 [-], 2634	385333208	type VI secretion ATPase, ClpV1 family	TssH
10	HP15_3468	3656052..3656879 [-], 828	385333209	hypothetical protein	TssL
11	HP15_3469	3656883..3658217 [-], 1335	385333210	hypothetical protein	TssK
12	HP15_3470	3658217..3658750 [-], 534	385333211	lipoprotein	TssJ
13	HP15_3471	3658747..3660045 [-], 1299	385333212	type VI secretion system, FHA domain-containing protein	Fha
14	HP15_3472	3660084..3661010 [-], 927	385333213	hypothetical protein	TssG
15	HP15_3473	3661064..3662836 [-], 1773	385333214	type VI secretion system, VCA0110	TssF
16	HP15_3474	3662983..3663423 [-], 441	385333215	type VI secretion system, lysozyme-related protein	TssE
17	HP15_3475	3663427..3664908 [-], 1482	385333216	hypothetical protein	TssC
18	HP15_3476	3664965..3665462 [-], 498	385333217	hypothetical protein	TssB
19	HP15_3477	3665741..3666001 [+], 261	385333218	acyl-coA-binding protein, ACBP
20	HP15_3478	3666135..3666452 [+], 318	385333219	integron integrase-like protein
21	HP15_3480	3666462..3666746 [-], 285	385333220	hypothetical protein
22	HP15_3479	3666745..3666882 [+], 138	385333221	hypothetical protein
23	HP15_3481 (greB)	3667023..3667538 [-], 516	385333222	transcription elongation factor GreB
24	HP15_3482	3667841..3668122 [+], 282	385333223	hypothetical protein
25	HP15_3483	3668140..3669552 [-], 1413	385333224	two-component, sensor histidine kinase
26	HP15_3484	3669593..3670273 [-], 681	385333225	DNA-binding response regulator

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

Homology Effector list

ABG57132

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	HP15_3883	4112887..4113417 [-], 531	385333624	Hcp protein	ABG57132

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Proteins        Genes

N/A

N/A