I. Summary

SecReT6 ID	605
Strain	Pseudomonas putida BIRD-1
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017530
Location	3415657..3443224
Comment
Function	N/A
T6SS Type	Type i; subtype i1
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	0	0	0	1	1	1	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	0	0	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PPUBIRD1_3044	3412574..3413290 [+], 717	386012581	Crp/FNR family transcriptional regulator
2	PPUBIRD1_3045	3413372..3413884 [-], 513	386012582	AmiS/UreI transporter
3	PPUBIRD1_3046	3413897..3414481 [-], 585	386012583	Response regulator receiver/ANTAR domain-containing protein
4	PPUBIRD1_3047	3414478..3415635 [-], 1158	386012584	branched-chain amino acid ABC transporter periplasmic component-like protein
5	PPUBIRD1_3048	3415657..3416778 [-], 1122	386012585	ATPase	TssH
6	PPUBIRD1_3049 (amiE)	3416834..3417877 [-], 1044	386012586	AmiE
7	PPUBIRD1_3051	3418064..3418930 [-], 867	386012587	Dihydrodipicolinate synthase
8	PPUBIRD1_3052	3419268..3422786 [-], 3519	386012588	Cellulose synthase subunit BcsC
9	PPUBIRD1_3053	3422774..3423889 [-], 1116	386012589	Endo-1,4-D-glucanase
10	PPUBIRD1_3054	3423889..3426177 [-], 2289	386012590	Cyclic di-GMP-binding protein
11	PPUBIRD1_3055 (bcsA)	3426174..3426908 [-], 735	386012591	BcsA
12	PPUBIRD1_3056 (bcsA_2)	3426908..3428782 [-], 1875	386012592	BcsA_2
13	PPUBIRD1_3057	3428779..3429486 [-], 708	386012593	Cellulose synthase, putative
14	PPUBIRD1_3058	3429483..3429701 [-], 219	386012594	hypothetical protein
15	PPUBIRD1_3059	3429698..3431311 [-], 1614	386012595	hypothetical protein
16	PPUBIRD1_3060	3431304..3431489 [-], 186	386012596	hypothetical protein
17	PPUBIRD1_3061	3431486..3432976 [-], 1491	386012597	hypothetical protein
18	PPUBIRD1_3062	3433279..3435132 [+], 1854	386012598	ABC transporter ATP-binding protein
19	PPUBIRD1_3063	3435210..3438830 [-], 3621	386012599	ImcF domain-containing protein	TssM
20	PPUBIRD1_3064	3438827..3440290 [-], 1464	386012600	ImpA domain-containing protein	TssA
21	PPUBIRD1_3065	3440278..3440634 [-], 357	386012601	hypothetical protein
22	PPUBIRD1_3066	3441255..3441758 [+], 504	386012602	hypothetical protein	TssB
23	PPUBIRD1_3067	3441776..3443224 [+], 1449	386012603	hypothetical protein	TssC
24	PPUBIRD1_3068	3443215..3445614 [+], 2400	386012604	hypothetical protein
25	PPUBIRD1_3069	3446196..3446510 [+], 315	386012605	hypothetical protein
26	PPUBIRD1_3070	3446912..3447583 [+], 672	386012606	hypothetical protein

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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