 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PPUBIRD1_3044 | 3412574..3413290 [+], 717 | 386012581 | Crp/FNR family transcriptional regulator | |
2 | PPUBIRD1_3045 | 3413372..3413884 [-], 513 | 386012582 | AmiS/UreI transporter | |
3 | PPUBIRD1_3046 | 3413897..3414481 [-], 585 | 386012583 | Response regulator receiver/ANTAR domain-containing protein | |
4 | PPUBIRD1_3047 | 3414478..3415635 [-], 1158 | 386012584 | branched-chain amino acid ABC transporter periplasmic component-like protein | |
5 | PPUBIRD1_3048 | 3415657..3416778 [-], 1122 | 386012585 | ATPase | TssH |
6 | PPUBIRD1_3049 (amiE) | 3416834..3417877 [-], 1044 | 386012586 | AmiE | |
7 | PPUBIRD1_3051 | 3418064..3418930 [-], 867 | 386012587 | Dihydrodipicolinate synthase | |
8 | PPUBIRD1_3052 | 3419268..3422786 [-], 3519 | 386012588 | Cellulose synthase subunit BcsC | |
9 | PPUBIRD1_3053 | 3422774..3423889 [-], 1116 | 386012589 | Endo-1,4-D-glucanase | |
10 | PPUBIRD1_3054 | 3423889..3426177 [-], 2289 | 386012590 | Cyclic di-GMP-binding protein | |
11 | PPUBIRD1_3055 (bcsA) | 3426174..3426908 [-], 735 | 386012591 | BcsA | |
12 | PPUBIRD1_3056 (bcsA_2) | 3426908..3428782 [-], 1875 | 386012592 | BcsA_2 | |
13 | PPUBIRD1_3057 | 3428779..3429486 [-], 708 | 386012593 | Cellulose synthase, putative | |
14 | PPUBIRD1_3058 | 3429483..3429701 [-], 219 | 386012594 | hypothetical protein | |
15 | PPUBIRD1_3059 | 3429698..3431311 [-], 1614 | 386012595 | hypothetical protein | |
16 | PPUBIRD1_3060 | 3431304..3431489 [-], 186 | 386012596 | hypothetical protein | |
17 | PPUBIRD1_3061 | 3431486..3432976 [-], 1491 | 386012597 | hypothetical protein | |
18 | PPUBIRD1_3062 | 3433279..3435132 [+], 1854 | 386012598 | ABC transporter ATP-binding protein | |
19 | PPUBIRD1_3063 | 3435210..3438830 [-], 3621 | 386012599 | ImcF domain-containing protein | TssM |
20 | PPUBIRD1_3064 | 3438827..3440290 [-], 1464 | 386012600 | ImpA domain-containing protein | TssA |
21 | PPUBIRD1_3065 | 3440278..3440634 [-], 357 | 386012601 | hypothetical protein | |
22 | PPUBIRD1_3066 | 3441255..3441758 [+], 504 | 386012602 | hypothetical protein | TssB |
23 | PPUBIRD1_3067 | 3441776..3443224 [+], 1449 | 386012603 | hypothetical protein | TssC |
24 | PPUBIRD1_3068 | 3443215..3445614 [+], 2400 | 386012604 | hypothetical protein | |
25 | PPUBIRD1_3069 | 3446196..3446510 [+], 315 | 386012605 | hypothetical protein | |
26 | PPUBIRD1_3070 | 3446912..3447583 [+], 672 | 386012606 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein