I. Summary

SecReT6 ID	607
Strain	Pseudomonas stutzeri DSM 4166
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017532
Location	120052..130065
Comment
Function	N/A
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	0	0	1	1	0	0	0	0	0
Component	TssG	TssJ	TssK	TssM
Number	0	1	1	1

III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PSTAA_0100	115090..116634 [-], 1545	386018740	hypothetical protein
2	PSTAA_0101	116646..116960 [-], 315	386018741	hypothetical protein
3	PSTAA_0102	117670..120003 [-], 2334	386018742	hypothetical protein
4	PSTAA_0103	120052..122100 [-], 2049	386018743	Rhs element Vgr protein	TssI
5	PSTAA_0104	122122..123093 [-], 972	386018744	protein kinase	Stk1
6	PSTAA_0105	123090..123821 [-], 732	386018745	protein phosphatase 2C domain-containing protein	Stp1
7	PSTAA_0106	123821..127360 [-], 3540	386018746	ImcF domain-containing protein	TssM
8	PSTAA_0107	127362..128243 [-], 882	386018747	hypothetical protein	TssL
9	PSTAA_0108	128249..129580 [-], 1332	386018748	hypothetical protein	TssK
10	PSTAA_0109	129583..130065 [-], 483	386018749	hypothetical protein	TssJ
11	PSTAA_0110	130070..131266 [-], 1197	386018750	FHA domain-containing protein	Fha
12	PSTAA_0111	131287..131421 [-], 135	386018751	hypothetical protein
13	PSTAA_0113	131969..132670 [+], 702	386018752	nickel-dependent hydrogenase b-type cytochrome subunit
14	PSTAA_0114	132705..133169 [-], 465	386018753	cytochrome c, class II
15	PSTAA_0115 (gabD-2)	133470..134918 [+], 1449	386018754	succinate-semialdehyde dehydrogenase

 Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins        Genes

V. Investigation of the genomic context of the T6SS gene cluster.

1. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the mobile genetic elements database, ACLAME.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

2. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against the virulence factor database, VFDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

3. BLASTp searches of the proteins encoded by T6SS gene cluster and its flanking regions against against the antibiotic resistance database, ARDB.

Job_id: Replicon RefSeq: T6SS Region Start (bp): T6SS Region End (bp): Upstream Region (kb): Downstream Region (kb):

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