SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	608
Strain	Pantoea ananatis AJ13355
Replicon	plasmid pEA320 [Browse all T6SS(s) in this replicon]
Accession	NC_017533
Location	143283..176025
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	2	1	1	1	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	2


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	PAJ_p0131 (yiaE)	138661..139437 [+], 777	386018490	putative 2-hydroxyacid dehydrogenase HI1556 YiaE
2	PAJ_p0132 (glsA1)	139605..140525 [-], 921	386018491	glutaminase 1 GlsA1
3	PAJ_p0133	140796..141599 [+], 804	386018492	hypothetical protein
4	PAJ_p0134 (clcA)	141526..142203 [+], 678	386018493	truncated H(+)/Cl(-) exchange transporter ClcA
5	PAJ_p0135	143283..143780 [+], 498	386018494	hypothetical protein	TssB
6	PAJ_p0136	143862..145361 [+], 1500	386018495	hypothetical protein	TssC
7	PAJ_p0137	145379..146719 [+], 1341	386018496	hypothetical protein	TssK
8	PAJ_p0138	146716..147405 [+], 690	386018497	hypothetical protein	TssL
9	PAJ_p0139	148065..149126 [+], 1062	386018498	putative OmpA-family membrane protein	TagL
10	PAJ_p0140	149131..149622 [+], 492	386018499	hemolysin Co-regulated protein Hcp	TssD
11	PAJ_p0141 (clpV)	149796..152456 [+], 2661	386018500	chaperone ClpV	TssH
12	PAJ_p0142	152395..154797 [+], 2403	386018501	hypothetical protein	TssI
13	PAJ_p0143	154812..157043 [+], 2232	386018502	hypothetical protein
14	PAJ_p0144	157047..157751 [+], 705	386018503	hypothetical protein
15	PAJ_p0145	157977..158258 [+], 282	386018504	hypothetical protein
16	PAJ_p0146	158401..158889 [+], 489	386018505	hypothetical protein
17	PAJ_p0147	159070..160278 [+], 1209	386018506	hypothetical protein
18	PAJ_p0148	160275..162131 [+], 1857	386018507	hypothetical protein	TssM
19	PAJ_p0149	162025..163761 [+], 1737	386018508	hypothetical protein	TssM
20	PAJ_p0150	163758..165359 [+], 1602	386018509	hypothetical protein	TssA
21	PAJ_p0151	165390..166667 [+], 1278	386018510	hypothetical protein	PAAR
22	PAJ_p0152	166728..167093 [+], 366	386018511	hypothetical protein
23	PAJ_p0153	167624..168052 [+], 429	386018512	hypothetical protein
24	PAJ_p0154	168276..169550 [+], 1275	386018513	hypothetical protein	PAAR
25	PAJ_p0155	169550..169984 [+], 435	386018514	hypothetical protein
26	PAJ_p0156	170526..172280 [+], 1755	386018515	hypothetical protein	TssF
27	PAJ_p0157	172244..173329 [+], 1086	386018516	hypothetical protein	TssG
28	PAJ_p0158	173352..173852 [+], 501	386018517	hypothetical protein	TssJ
29	PAJ_p0159	173852..174307 [+], 456	386018518	hypothetical protein	TssE
30	PAJ_p0160	174634..176025 [+], 1392	386018519	hypothetical protein	TssA
31	PAJ_p0161 (ydcX)	176353..176526 [-], 174	386018520	inner membrane protein YdcX
32	PAJ_p0162 (ybcL)	176895..177431 [+], 537	386018521	YbcL protein
33	PAJ_p0163 (proP)	177619..178968 [-], 1350	386018522	proline/betaine transporter ProP
34	PAJ_p0164 (blt)	179331..180533 [-], 1203	386018523	multidrug resistance protein 2 Blt

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	PAJ_p0140	149131..149622 [+], 492	386018499	hemolysin Co-regulated protein Hcp	EC042_4529

Download FASTA format files

Proteins Genes

N/A