SecReT6

T6SS
Effector
Immunity
Reference

I. Summary

SecReT6 ID	609
Strain	Klebsiella pneumoniae KCTC 2242
Replicon	chromosome [Browse all T6SS(s) in this replicon]
Accession	NC_017540
Location	2049854..2076278
Comment
Function	N/A
T6SS Type	Type i; subtype i2
Bioinformatics investigation has been performed on this T6SS.

II. T6SS components

Component	TssH	TssD	TssL	TssI	TssA	TssB	TssC	TssE	TssF
Number	1	1	1	1	1	1	1	0	1
Component	TssG	TssJ	TssK	TssM
Number	1	1	1	1


III. genome coordinates of the T6SS gene cluster
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Note
1	KPN2242_09725	2044927..2045841 [-], 915	386034507	LysR family transcriptional regulator
2	KPN2242_09730	2045950..2046711 [+], 762	386034508	7-alpha-hydroxysteroid dehydrogenase
3	KPN2242_09735	2046928..2048460 [+], 1533	386034509	putative metal-dependent phosphohydrolase with HD subdomain
4	KPN2242_09740	2048470..2048595 [-], 126	386034510	hypothetical protein
5	KPN2242_09745	2048647..2049195 [-], 549	386034511	putative intracellular protease/amidase
6	KPN2242_09750	2049854..2050345 [+], 492	386034512	hypothetical protein	TssB
7	KPN2242_09755	2050388..2051932 [+], 1545	386034513	hypothetical protein	TssC
8	KPN2242_09760	2051945..2053285 [+], 1341	386034514	hypothetical protein	TssK
9	KPN2242_09765	2053282..2053971 [+], 690	386034515	hypothetical protein	TssL
10	KPN2242_09770	2053968..2055674 [+], 1707	386034516	putative outer membrane protein	TagL
11	KPN2242_09775	2055679..2056170 [+], 492	386034517	type VI secretion system effector	TssD
12	KPN2242_09780	2056435..2059065 [+], 2631	386034518	putative protease	TssH
13	KPN2242_09785	2059083..2061461 [+], 2379	386034519	Rhs element Vgr protein	TssI
14	KPN2242_09790	2061461..2062240 [+], 780	386034520	hypothetical protein
15	KPN2242_09795	2062303..2062833 [+], 531	386034521	lipoprotein
16	KPN2242_09800	2062902..2063432 [+], 531	386034522	lipoprotein
17	KPN2242_09805	2063501..2064031 [+], 531	386034523	lipoprotein
18	KPN2242_09810	2064019..2066460 [+], 2442	386034524	hypothetical protein
19	KPN2242_09815	2066481..2066738 [+], 258	386034525	PaaR repeat-containing protein	PAAR
20	KPN2242_09820	2066735..2067874 [+], 1140	386034526	hypothetical protein
21	KPN2242_09825	2067858..2071286 [+], 3429	386034527	ImcF domain-containing protein	TssM
22	KPN2242_09830	2071283..2072875 [+], 1593	386034528	type VI secretion-associated protein	TssA
23	KPN2242_09835	2072955..2074709 [+], 1755	386034529	type VI secretion protein	TssF
24	KPN2242_09840	2074673..2075758 [+], 1086	386034530	hypothetical protein	TssG
25	KPN2242_09845	2075751..2076278 [+], 528	386034531	hypothetical protein	TssJ
26	KPN2242_09850	2076405..2076899 [+], 495	386034532	hypothetical protein
27	KPN2242_09855	2076966..2077679 [-], 714	386034533	oxidoreductase
28	KPN2242_09860	2077753..2078346 [+], 594	386034534	putative transcriptional regulator
29	KPN2242_09865	2078351..2079106 [-], 756	386034535	putative dehydrogenase/reductase oxidoreductase protein
30	KPN2242_09870	2079265..2080143 [+], 879	386034536	putative ARAC-type regulatory protein
31	KPN2242_09875	2080194..2080400 [-], 207	386034537	hypothetical protein

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein

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Proteins Genes

V. Investigation of the genomic context of the T6SS gene cluster.

Homology Effector list

EC042_4529

Effector identified
#	Locus tag (Gene)	Coordinates [+/-], size (bp)	Protein GI	Product	Homolog
1	KPN2242_09775	2055679..2056170 [+], 492	386034517	type VI secretion system effector	EC042_4529

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Proteins Genes

N/A