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III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | KPN2242_09725 | 2044927..2045841 [-], 915 | 386034507 | LysR family transcriptional regulator | |
2 | KPN2242_09730 | 2045950..2046711 [+], 762 | 386034508 | 7-alpha-hydroxysteroid dehydrogenase | |
3 | KPN2242_09735 | 2046928..2048460 [+], 1533 | 386034509 | putative metal-dependent phosphohydrolase with HD subdomain | |
4 | KPN2242_09740 | 2048470..2048595 [-], 126 | 386034510 | hypothetical protein | |
5 | KPN2242_09745 | 2048647..2049195 [-], 549 | 386034511 | putative intracellular protease/amidase | |
6 | KPN2242_09750 | 2049854..2050345 [+], 492 | 386034512 | hypothetical protein | TssB |
7 | KPN2242_09755 | 2050388..2051932 [+], 1545 | 386034513 | hypothetical protein | TssC |
8 | KPN2242_09760 | 2051945..2053285 [+], 1341 | 386034514 | hypothetical protein | TssK |
9 | KPN2242_09765 | 2053282..2053971 [+], 690 | 386034515 | hypothetical protein | TssL |
10 | KPN2242_09770 | 2053968..2055674 [+], 1707 | 386034516 | putative outer membrane protein | TagL |
11 | KPN2242_09775 | 2055679..2056170 [+], 492 | 386034517 | type VI secretion system effector | TssD |
12 | KPN2242_09780 | 2056435..2059065 [+], 2631 | 386034518 | putative protease | TssH |
13 | KPN2242_09785 | 2059083..2061461 [+], 2379 | 386034519 | Rhs element Vgr protein | TssI |
14 | KPN2242_09790 | 2061461..2062240 [+], 780 | 386034520 | hypothetical protein | |
15 | KPN2242_09795 | 2062303..2062833 [+], 531 | 386034521 | lipoprotein | |
16 | KPN2242_09800 | 2062902..2063432 [+], 531 | 386034522 | lipoprotein | |
17 | KPN2242_09805 | 2063501..2064031 [+], 531 | 386034523 | lipoprotein | |
18 | KPN2242_09810 | 2064019..2066460 [+], 2442 | 386034524 | hypothetical protein | |
19 | KPN2242_09815 | 2066481..2066738 [+], 258 | 386034525 | PaaR repeat-containing protein | PAAR |
20 | KPN2242_09820 | 2066735..2067874 [+], 1140 | 386034526 | hypothetical protein | |
21 | KPN2242_09825 | 2067858..2071286 [+], 3429 | 386034527 | ImcF domain-containing protein | TssM |
22 | KPN2242_09830 | 2071283..2072875 [+], 1593 | 386034528 | type VI secretion-associated protein | TssA |
23 | KPN2242_09835 | 2072955..2074709 [+], 1755 | 386034529 | type VI secretion protein | TssF |
24 | KPN2242_09840 | 2074673..2075758 [+], 1086 | 386034530 | hypothetical protein | TssG |
25 | KPN2242_09845 | 2075751..2076278 [+], 528 | 386034531 | hypothetical protein | TssJ |
26 | KPN2242_09850 | 2076405..2076899 [+], 495 | 386034532 | hypothetical protein | |
27 | KPN2242_09855 | 2076966..2077679 [-], 714 | 386034533 | oxidoreductase | |
28 | KPN2242_09860 | 2077753..2078346 [+], 594 | 386034534 | putative transcriptional regulator | |
29 | KPN2242_09865 | 2078351..2079106 [-], 756 | 386034535 | putative dehydrogenase/reductase oxidoreductase protein | |
30 | KPN2242_09870 | 2079265..2080143 [+], 879 | 386034536 | putative ARAC-type regulatory protein | |
31 | KPN2242_09875 | 2080194..2080400 [-], 207 | 386034537 | hypothetical protein | |
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Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein