 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | ACIAD_RS12160 | 2628937..2629467 [-], 531 | 648275822 | flavin reductase family protein | |
2 | ACIAD_RS12165 | 2629502..2630740 [-], 1239 | 491067333 | hypothetical protein | |
3 | ACIAD_RS12170 | 2630795..2631586 [-], 792 | 491067336 | SDR family oxidoreductase | |
4 | ACIAD_RS12175 | 2631616..2632863 [-], 1248 | 491067339 | dienelactone hydrolase family protein | |
5 | ACIAD_RS12180 | 2633143..2634144 [-], 1002 | 491067341 | AraC family transcriptional regulator | |
6 | ACIAD_RS12185 | 2634401..2635675 [-], 1275 | 1842240247 | Glu/Leu/Phe/Val dehydrogenase | |
7 | ACIAD_RS12190 | 2635901..2636167 [-], 267 | 491067346 | PAAR domain-containing protein | |
8 | ACIAD_RS12195 | 2636197..2636961 [-], 765 | 491067348 | OmpA family protein | |
9 | ACIAD_RS12200 (tagF) | 2636964..2637923 [-], 960 | 491067356 | type VI secretion system-associated protein TagF | |
10 | ACIAD_RS12205 (tssM) | 2637964..2641785 [-], 3822 | 491067362 | type VI secretion system membrane subunit TssM | |
11 | ACIAD_RS12210 | 2641820..2643223 [-], 1404 | 491067366 | hypothetical protein | |
12 | ACIAD_RS12215 (tssG) | 2643220..2644218 [-], 999 | 491067368 | type VI secretion system baseplate subunit TssG | |
13 | ACIAD_RS12220 (tssF) | 2644182..2645990 [-], 1809 | 491067370 | type VI secretion system baseplate subunit TssF | |
14 | ACIAD_RS12225 (tssE) | 2646002..2646475 [-], 474 | 491067373 | type VI secretion system baseplate subunit TssE | |
15 | ACIAD_RS12230 | 2646545..2647048 [-], 504 | 491067376 | type VI secretion system tube protein Hcp | |
16 | ACIAD_RS12235 (tssC) | 2647094..2648575 [-], 1482 | 491067380 | type VI secretion system contractile sheath large subunit | |
17 | ACIAD_RS12240 (tssB) | 2648568..2649071 [-], 504 | 491067383 | type VI secretion system contractile sheath small subunit | |
18 | ACIAD_RS12245 | 2649091..2649747 [-], 657 | 491067385 | hypothetical protein | |
19 | ACIAD_RS12250 (tssH) | 2650134..2652809 [+], 2676 | 1279672583 | type VI secretion system ATPase TssH | |
20 | ACIAD_RS12255 (tssA) | 2652825..2653928 [+], 1104 | 491067390 | type VI secretion system protein TssA | |
21 | ACIAD_RS12260 (tssK) | 2653945..2655312 [+], 1368 | 491067393 | type VI secretion system baseplate subunit TssK | |
22 | ACIAD_RS12265 | 2655324..2656127 [+], 804 | 491067397 | type IVB secretion system protein IcmH/DotU | |
23 | ACIAD_RS12270 | 2656138..2656719 [+], 582 | 491067400 | hypothetical protein | |
24 | ACIAD_RS12275 | 2656730..2657683 [+], 954 | 648275820 | M15 family metallopeptidase | |
25 | ACIAD_RS12280 (prpF) | 2657701..2658882 [-], 1182 | 491067404 | 2-methylaconitate cis-trans isomerase PrpF | |
26 | ACIAD_RS12285 | 2659669..2660025 [+], 357 | 491067407 | hypothetical protein | |
27 | ACIAD_RS12290 | 2660030..2660530 [+], 501 | 491067410 | hypothetical protein | |
28 | ACIAD_RS12295 | 2660893..2661510 [+], 618 | 491067416 | hypothetical protein | |
29 | ACIAD_RS12300 | 2661512..2661904 [+], 393 | 491067418 | hypothetical protein | |
30 | ACIAD_RS12305 | 2662359..2663201 [+], 843 | 491067421 | hypothetical protein | |
31 | ACIAD_RS12310 | 2663226..2663423 [+], 198 | 499495953 | hypothetical protein | |
32 | ACIAD_RS12315 | 2663658..2664314 [+], 657 | 491067427 | hypothetical protein | |
33 | ACIAD_RS12325 | 2664856..2665167 [+], 312 | 491067434 | hypothetical protein | |
34 | ACIAD_RS12330 | 2665176..2665442 [+], 267 | 499495954 | hypothetical protein | |
|
Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein