I. Summary
Component | TssH | TssD | TssL | TssI | TssA | TssB | TssC | TssE | TssF |
Number | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 |
Component | TssG | TssJ | TssK | TssM |
Number | 1 | 1 | 1 | 1 |
 |
III. genome coordinates of the T6SS gene cluster |
# | Locus tag (Gene) | Coordinates [+/-], size (bp) | Protein GI | Product | Note |
1 | PAM18_0077 (pppA) | 88531..89259 [-], 729 | 386056146 | PppA | PppA |
2 | PAM18_0078 | 89269..89949 [-], 681 | 386056147 | hypothetical protein | TagF |
3 | PAM18_0079 (icmF1) | 89946..93476 [-], 3531 | 386056148 | IcmF1 | TssM |
4 | PAM18_0080 | 93473..94822 [-], 1350 | 386056149 | hypothetical protein | TssL |
5 | PAM18_0081 | 94829..96163 [-], 1335 | 386056150 | hypothetical protein | TssK |
6 | PAM18_0082 | 96179..96643 [-], 465 | 386056151 | hypothetical protein | TssJ |
7 | PAM18_0083 (fha1) | 96688..98205 [-], 1518 | 386056152 | Fha1 | Fha |
8 | PAM18_0084 | 98573..99607 [+], 1035 | 386056153 | hypothetical protein | TssA |
9 | PAM18_0085 | 99696..100214 [+], 519 | 386056154 | hypothetical protein | TssB |
10 | PAM18_0086 | 100227..101723 [+], 1497 | 386056155 | hypothetical protein | TssC |
11 | PAM18_0087 (hcp1) | 101811..102287 [+], 477 | 386056156 | hypothetical protein | TssD |
12 | PAM18_0088 | 102515..103300 [+], 786 | 386056157 | hypothetical protein | TagJ |
13 | PAM18_0089 | 103302..103811 [+], 510 | 386056158 | hypothetical protein | TssE |
14 | PAM18_0090 | 103808..105667 [+], 1860 | 386056159 | hypothetical protein | TssF |
15 | PAM18_0091 | 105631..106677 [+], 1047 | 386056160 | hypothetical protein | TssG |
16 | PAM18_0092 (clpV1) | 106670..109378 [+], 2709 | 386056161 | ClpV1 protein | TssH |
17 | PAM18_0093 (vgrG1) | 109416..111356 [+], 1941 | 386056162 | VgrG1 | TssI |
18 | PAM18_0094 | 111471..111755 [-], 285 | 386056163 | hypothetical protein | Tsi6 (i) |
19 | PAM18_0095 | 111752..113044 [-], 1293 | 386056164 | hypothetical protein | Tse6 (e) |
20 | PAM18_0096 | 113060..113494 [-], 435 | 386056165 | hypothetical protein | |
21 | PAM18_0097 | 113748..115973 [+], 2226 | 386056166 | hypothetical protein | TssI |
22 | PAM18_0098 | 116001..116450 [+], 450 | 386056167 | hypothetical protein | |
23 | PAM18_0099 | 116467..117579 [+], 1113 | 386056168 | hypothetical protein | |
24 | PAM18_0100 | 117576..118613 [+], 1038 | 386056169 | 3-oxoacyl-(acyl carrier protein) synthase | |
25 | PAM18_0101 | 118613..119773 [+], 1161 | 386056170 | hypothetical protein | PA0099 (e) |
26 | PAM18_0102 | 119795..120715 [+], 921 | 386056171 | hypothetical protein | |
|

Genes in the 5-kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any. In the 'Note' column,if available, '(e)' denotes effector while '(i)' for immunity protein
V. Investigation of the genomic context of the T6SS gene cluster.